Clone Read SL_EcoRI0060E12_T7_250611

Sequence Read 
Read Class
BAC ends
Read ID
SL_EcoRI0060E12_T7_250611
Primer
T7
ID from Seq. Facility
SL_EcoRI_060_E12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
568 trimmed for vector and quality, 977 raw
Genbank Accession
CZ954303
Sequence
>SL_EcoRI0060E12_T7_250611 (raw untrimmed)
CTTATTTTGTCAGAAAAGAAGATCTTGACTCCCACAAGACATTTATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACC
TCTCCAGCTAATGGGCGTCTAGAGGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCTTTTCTACTTAAAGCATCCGCCACAACATTCGCCTTTCCCG
GATGATACAAGATAGTGATATCATAGTCCTTTCAGTAGCTCCATCCATCTCCTCTGTCTCAAGTTCAAATCTTTCTGAGTAAAGACATACTGAAGGCTAC
AATGATCCGCGTAGACCTCATACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAATTCCAAATCGTGGGTTGGATA
GTTACGTTCATGCACTTTTAATTGCCTCGAAGCATAAGCAATCACACTCTTCTCTTGCATTAGTACTGCACCCAAACCCGAATAGGACGCATCACAATAA
ACAATGAAGTTCTTACCCTCTACTGGCAAGGTAAGGATAAGTGCGGTGGTGAACAAAGTTTTGAGCTTCTGAAAGCTTTCCCCAGATTCGTCCGGACCAT
ACAAATGGAACATTCTGCTTAGTCAAGTTCGTCAATTGGGAAGCAATATTAAAGAATCCCTTGACAAATCGACGGTAGTAGCTATCTAACCCAAAAAGCT
TCCTATTTCGGAACATTAGTAGGTCTTACCAATTCTTCCCTGTCCTCAATGGTTAGAAAGTTCCCCCATTATCTCCTCCTTAAAAAACATGTGCCCCATA
AAAGGCCCGGTTTTAACCCAAAATTTCCCATTAAATAACTTGCTATAAAACTTTTTTCCCTCAACATTTCCAAAACATTCTCAAAGGCCCCACATGGTCC
TTTCTGCTCTTTGGGTTATCCCATTTTCTCTTACAAATTCCATTCTTTTAGGGGCCCAATTTTATCTTAAAATCCCG
>SL_EcoRI0060E12_T7_250611 (trimmed for quality and cloning vector)
TTTTGTCAGAAAAGAAGATCTTGACTCCCACAAGACATTTATCCTCCCTTCTCATTTACTTCTAATCTCATCAAGTCGTTAGCTAGAGTCTGAACCTCTC
CAGCTAATGGGCGTCTAGAGGCTTGCAAGTGAGCTAGACTTCCCATGCTTCCCGCTTTTCTACTTAAAGCATCCGCCACAACATTCGCCTTTCCCGGATG
ATACAAGATAGTGATATCATAGTCCTTTCAGTAGCTCCATCCATCTCCTCTGTCTCAAGTTCAAATCTTTCTGAGTAAAGACATACTGAAGGCTACAATG
ATCCGCGTAGACCTCATACTTAACCCCATATAAATAGTGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAATTCCAAATCGTGGGTTGGATAGTTA
CGTTCATGCACTTTTAATTGCCTCGAAGCATAAGCAATCACACTCTTCTCTTGCATTAGTACTGCACCCAAACCCGAATAGGACGCATCACAATAAACAA
TGAAGTTCTTACCCTCTACTGGCAAGGTAAGGATAAGTGCGGTGGTGAACAAAGTTTTGAGCTTCTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977306
Expected error %
0.481575
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 180 E Value 2e-63 Identity 77.00% Align. Length 513bp (90.32%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 178 E Value 6e-63 Identity 76.10% Align. Length 513bp (90.32%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_EcoRI0060E12
Clone
Clone name
sle-60e12
SL_EcoRI0060E12
C01SLe0060E12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato EcoRI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pIndigoBAC-5
Accession
Heinz 1706
Restriction enzyme
EcoRI

Other Reads:
1 sequencing reads found