Clone Read SL_EcoRI0057D07_SP6_256929

Sequence Read 
Read Class
BAC ends
Read ID
SL_EcoRI0057D07_SP6_256929
Primer
SP6
ID from Seq. Facility
SL_EcoRI_057_D07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
567 trimmed for vector and quality, 1048 raw
Genbank Accession
CZ956648
Sequence
>SL_EcoRI0057D07_SP6_256929 (raw untrimmed)
GGGGNCCGTAAGNNGNNGNNNANCNANAGGANCNCGGGNACCCAGCNCGAANNCNNNNGCAAAAGACGCCTTTAAGGGAAAGATTTGTAAGAGTTCCAGC
AGTATTCTGCTTCTGACAGAGAAGAGCATTAAAGTTCAACACAGATAGAAACTATTCTCACGCAGAAAATTGCTTAAGAAGAGGCGGAGAAGTATGGGTC
CTAAGAGTTGGAAGCCAATAATCTGGAGTTTGACAATTTTCCAGCCATAGTTAAATTTTACACCAACAATAAATATAGCTTCTCATCACGCTAAATAGAT
GCTCGATGCATACAATTTATAAGTACTAAAGACCTCATCAGTTTGAGAACAAATGAACAGATTCCATCTTTTCCAGACGGGAAAAAATAGTTGTACGAAA
GCATAAAAGAGGACAATTTCTGTTTCAACTTCTGGTACATATGCAAATGATATAAACTACTTGATATATTGCGAAACCCACTTAAAGCCATCACCATAAC
CCATTTTGCGTACAATACTGCACATAAACACCTCCAAGGGACGAACACTAGAATCAGCTAGATTCACCTTACCCTTGCCAGTAGTGACACCAGTCAACCC
AAGGTGATAACGCAACTCATCTTCTGAGGCAGCATACGGTATGTCTATCTTGTTTCCCAAATGAGGAAGGGAACAGTCGCTAGGGACTCATCAGAAAGCA
GTGCGTCTAATTCTTTCTTTGACTCCACGAAACGCTCTTGGTCATAAGCATCTACCGGGTGTTCAACAGCGTCCACCTTGCAAACGCCACCTATGGCTAA
TCAGGAAAAGGCTCCCATCTTCTTTTTTAGCCGGGTGTTAGTTTACAAACGGGAAAAAAAGTTGAAAAAAAAAAATTAACCGGGCTCCAAAGGTAATAAA
AAGTAACTGGCTTCCTGACCCCCCAAAATCCCCATAAACTTCTGTGGGAGGATAACCCAGGGGAAAAACCTGCAATTGTCCAGAATTTTTTATAAAAACC
CGGAAAAAAAAAATAATAAACCCCCCTCGGAAGGGTCGGAACCCCAAN
>SL_EcoRI0057D07_SP6_256929 (trimmed for quality and cloning vector)
GTAAGAGTTCCAGCAGTATTCTGCTTCTGACAGAGAAGAGCATTAAAGTTCAACACAGATAGAAACTATTCTCACGCAGAAAATTGCTTAAGAAGAGGCG
GAGAAGTATGGGTCCTAAGAGTTGGAAGCCAATAATCTGGAGTTTGACAATTTTCCAGCCATAGTTAAATTTTACACCAACAATAAATATAGCTTCTCAT
CACGCTAAATAGATGCTCGATGCATACAATTTATAAGTACTAAAGACCTCATCAGTTTGAGAACAAATGAACAGATTCCATCTTTTCCAGACGGGAAAAA
ATAGTTGTACGAAAGCATAAAAGAGGACAATTTCTGTTTCAACTTCTGGTACATATGCAAATGATATAAACTACTTGATATATTGCGAAACCCACTTAAA
GCCATCACCATAACCCATTTTGCGTACAATACTGCACATAAACACCTCCAAGGGACGAACACTAGAATCAGCTAGATTCACCTTACCCTTGCCAGTAGTG
ACACCAGTCAACCCAAGGTGATAACGCAACTCATCTTCTGAGGCAGCATACGGTATGTCTATCTTGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.966702
Expected error %
0.353934
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g02080.1 Score 100 E Value 4e-22 Identity 25.50% Align. Length 191bp (33.69%) Frame 3
68417.m00279 GTP-binding protein (SAR1A) identical to SP:O04834 GTP-binding protein SAR1A. [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g02620.1 Score 98 E Value 3e-21 Identity 24.50% Align. Length 191bp (33.69%) Frame 3
68414.m00212 GTP-binding protein (SAR1A) identical to GTP-binding protein Sar1 (SP:O04834) [Arabidopsis thaliana]; contains domain PF00025: ADP-ribosylation factor family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA69699.1| Score 105 E Value 7e-22 Identity 26.60% Align. Length 191bp (33.69%) Frame 3
small GTP-binding protein [Nicotiana plumbaginifolia] pir||T16964 GTP-binding protein - curled-leaved tobacco
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA13463.1| Score 102 E Value 8e-21 Identity 26.00% Align. Length 191bp (33.69%) Frame 3
NtSar1 protein [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_EcoRI0057D07
Clone
Clone name
sle-57d7
SL_EcoRI0057D07
C01SLe0057D07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato EcoRI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pIndigoBAC-5
Accession
Heinz 1706
Restriction enzyme
EcoRI

Other Reads:
1 sequencing reads found