Clone Read SL_MboI0039G19_SP6_282390

Sequence Read 
Read Class
BAC ends
Read ID
SL_MboI0039G19_SP6_282390
Primer
SP6
ID from Seq. Facility
SL_MboI_39_G19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
591 trimmed for vector and quality, 883 raw
Genbank Accession
DU012417
Sequence
>SL_MboI0039G19_SP6_282390 (raw untrimmed)
NCCACTGTGCTGCAGTGACTCTGAGGATCTGAAGCTTGTGGGTAGATCGTTCAGGAATTGAAAAAGTGATTGACTAGTGCCCCGGTGTTGACCTTACTTG
AAGATACACAAGGTTTTTGTGGTATATTCTGATGTGTCTAGAGTTTGATTGAGTTTTGTGTTATTGCAGAATCATAAAGTTATAGATTATACCTCAAGAT
AGCTGAAAGTTCACGAGAAGAATTACCCAACCCATAATCTAGAGTTTAATGACATAGTATTCGCTTTGAAAATATGGCACACTATCTTTATGGTGTTCAT
GTAGATGTGTTCACTAATCACAAGTGCCTTCATTATGTGTTTAGGCAAAATGATCTTAATCTCAGAGAAAGGAGATGGTTGGAGTTACTCAAGGATTATG
ACATGAGTATTCTCTATCACCAAGGTAAGGCTAATATTGTTGCTGATGCTTTGAGTAGGTTGTCTATTAGGTAGTAACTCACTACTGAATAAGCCAAGAA
AGAGTTAGCAAAAGATGTGCATAGACTTGCAGGATTAGGAGTTTGACTGATGGATTCCAACGAAAGAGGAGGAATGGCGATGGATGGGGCTGAATAATCA
TTAGCGTCTGAAGTGAAAGAGAAATAGGGTCAATATCCTATTTTGCTTTAATTGAAGGAAAATCTTTCATAAGCAAAAACTAAATGGCTTTCCAAACAAG
GGGAGATGAATTTTCCGAGGGGGGAAGAACTTCCAATCCAGGGATCTTGGGAGGAAAGCTCACAAATCCAGAATATTCCATCCCCTCCGGGTTCCCCACA
AAAATTTAACCAGGGCCCCAAAAAAAATGGTATTGGGGGGAATTATTTTGAAAAGGGATTTATAAGAATTTTTTTTGTAAAAG
>SL_MboI0039G19_SP6_282390 (trimmed for quality and cloning vector)
GGATCTGAAGCTTGTGGGTAGATCGTTCAGGAATTGAAAAAGTGATTGACTAGTGCCCCGGTGTTGACCTTACTTGAAGATACACAAGGTTTTTGTGGTA
TATTCTGATGTGTCTAGAGTTTGATTGAGTTTTGTGTTATTGCAGAATCATAAAGTTATAGATTATACCTCAAGATAGCTGAAAGTTCACGAGAAGAATT
ACCCAACCCATAATCTAGAGTTTAATGACATAGTATTCGCTTTGAAAATATGGCACACTATCTTTATGGTGTTCATGTAGATGTGTTCACTAATCACAAG
TGCCTTCATTATGTGTTTAGGCAAAATGATCTTAATCTCAGAGAAAGGAGATGGTTGGAGTTACTCAAGGATTATGACATGAGTATTCTCTATCACCAAG
GTAAGGCTAATATTGTTGCTGATGCTTTGAGTAGGTTGTCTATTAGGTAGTAACTCACTACTGAATAAGCCAAGAAAGAGTTAGCAAAAGATGTGCATAG
ACTTGCAGGATTAGGAGTTTGACTGATGGATTCCAACGAAAGAGGAGGAATGGCGATGGATGGGGCTGAATAATCATTAGCGTCTGAAGTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956341
Expected error %
0.224722
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38733.1| Score 132 E Value 5e-30 Identity 14.80% Align. Length 587bp (99.32%) Frame 2
putative retrotransposon gag protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 129 E Value 4e-29 Identity 15.60% Align. Length 587bp (99.32%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_MboI0039G19
Clone
Clone name
slm-39g19
SL_MboI0039G19
C01SLm0039G19
Clone type
BAC
Contamination
none
Estimated length
90,651
Library
Name
Tomato MboI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pECBAC1
Accession
Heinz 1706
Restriction enzyme
MboI

Other Reads:
1 sequencing reads found