Clone Read SL_EcoRI0006A07_SP6_289524

Sequence Read 
Read Class
BAC ends
Read ID
SL_EcoRI0006A07_SP6_289524
Primer
SP6
ID from Seq. Facility
SL_EcoRI_006_A07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
644 trimmed for vector and quality, 872 raw
Genbank Accession
CZ960642
Sequence
>SL_EcoRI0006A07_SP6_289524 (raw untrimmed)
ACGTNTTNCCGGTCTGCGCAGTCGATCTGAGGATCCCCGGGTACCGAGCTCGAATTCTCATCTTTAATGGGAAAGGAGTTTGAAATGAGCATGATGGGTG
AGTTGACATTCTTCCTGGGTCTGCAAATCAAGCAATCATCAAATGGGATTTCAATATGCCAGGAGAAGTACATCAAAGAGCTGCTGAATAAATTCAATAT
GTTTGATTCTAAACCTATTGATACTCCTATGGGAACAAATTCCAAGATGATAGTAGAAGAATCTGATCCCCTTGTGAATCAGACAATGTATAGAGGAATC
ATTGGCTCCTTGTTATATCTGACTGCTAGCAGGCCTGATATTGTGTATAGTGTTGGAATGTGTGTCAGGTTTCAAGCATGTCCTCGTGATTCACACCTGA
AGGCTGCAAAACATATTCTCAGATATTTGAAGAAAACAGGGGACCTGGTTCTCTTTTATCCTGCAGGTGACAATTTTGATCTGGTTGGTTTTGCAGATGC
TGATTTTGCAGGTTATCAAGTTGACAGGAAGAGTACCTCTGGAATGGCTCATTTCCTTGGATCATCACTTATCTCTTGGGGTACCAAGAAGCAGAACTCT
GTAGCTCTTTCAACTGCTGAAGCAAAATATATAGTTGCTACAGCTTGCTGTTCTCAGTTGCTGTGGATCAGGCAACACTTGGAGGATTTTGGGATTCACA
TCCAAGCAATTCCTCTTATGTGTGACAACACAAGTGCAGTTAGTATGGGAAAGAATTCAGTTTTCCATTAGAGAACCTAACTTATTTATGTCCGAACTTC
CTTCCTGAGAAATAATGTTGAGAAGGGAAATATTTGTGCTTACTTCTGTCCACCGAAGGAGCAAATGGCAAA
>SL_EcoRI0006A07_SP6_289524 (trimmed for quality and cloning vector)
CTCATCTTTAATGGGAAAGGAGTTTGAAATGAGCATGATGGGTGAGTTGACATTCTTCCTGGGTCTGCAAATCAAGCAATCATCAAATGGGATTTCAATA
TGCCAGGAGAAGTACATCAAAGAGCTGCTGAATAAATTCAATATGTTTGATTCTAAACCTATTGATACTCCTATGGGAACAAATTCCAAGATGATAGTAG
AAGAATCTGATCCCCTTGTGAATCAGACAATGTATAGAGGAATCATTGGCTCCTTGTTATATCTGACTGCTAGCAGGCCTGATATTGTGTATAGTGTTGG
AATGTGTGTCAGGTTTCAAGCATGTCCTCGTGATTCACACCTGAAGGCTGCAAAACATATTCTCAGATATTTGAAGAAAACAGGGGACCTGGTTCTCTTT
TATCCTGCAGGTGACAATTTTGATCTGGTTGGTTTTGCAGATGCTGATTTTGCAGGTTATCAAGTTGACAGGAAGAGTACCTCTGGAATGGCTCATTTCC
TTGGATCATCACTTATCTCTTGGGGTACCAAGAAGCAGAACTCTGTAGCTCTTTCAACTGCTGAAGCAAAATATATAGTTGCTACAGCTTGCTGTTCTCA
GTTGCTGTGGATCAGGCAACACTTGGAGGATTTTGGGATTCACA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
3' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.947126
Expected error %
0.300807
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 140 E Value 5e-34 Identity 12.30% Align. Length 608bp (94.41%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_912905.1| Score 265 E Value 5e-70 Identity 20.40% Align. Length 641bp (99.53%) Frame 3
unnamed protein product [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD20307.1| Score 258 E Value 9e-68 Identity 19.80% Align. Length 635bp (98.60%) Frame 3
copia-type pol polyprotein [Zea mays]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_EcoRI0006A07
Clone
Clone name
sle-6a7
SL_EcoRI0006A07
C01SLe0006A07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato EcoRI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pIndigoBAC-5
Accession
Heinz 1706
Restriction enzyme
EcoRI

Other Reads:
1 sequencing reads found