Clone Read SL_EcoRI0010D20_SP6_290767

Sequence Read 
Read Class
BAC ends
Read ID
SL_EcoRI0010D20_SP6_290767
Primer
SP6
ID from Seq. Facility
SL_EcoRI_010_D20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
398 trimmed for vector and quality, 896 raw
Genbank Accession
CZ961332
Sequence
>SL_EcoRI0010D20_SP6_290767 (raw untrimmed)
GCCTGCAGGTCGACTCTAGAGGATCCCCGGGTACCGAGCTCGTATTCTTTACAAGGGGCCGAAATATTACTCGAATTGTATGTATAATTATAGGAGAGCT
CAATCAACGATAGGTGATCATCTCAATTTCCATTAAAATCGATAACATAAGATCTTAGCATATTTCTAGAGTTTTGATGGTAAGTTTCACTTTACCATTC
ATTTAAGGATGAAAGATGGTGCTAAGTTGCACTTGAGTACCTAACCCATTTTGAAAAGACCTCTATAAACGAGAAGTGAATTGGGCACCTCTATCTAAAA
TGAAAGACAAAGGGATCCCATGTAAGCTAACAATATCATTAATGTATAATCTAGCATACTCTACCATCAAATAAGTAGAGCTAATTGGGATAAAGTGGGA
AAATTTCATCAACATATCTAGAATAACCCTTATTTTTTTTTTTTACCTCCGAGTTCTTGGCAACCTAACTACAAACACAATATTTATGTCTTCCAATCTT
AAATTTCGATTAATCCATTCATCTGTTTTGATCGCCCATTTTTTGATGCTAATTCATTTATAAATTTTTTTAATTATGACATTATTATCCTTTTATCTTG
TTATGTATTTTTCCATTTATTTTTACTAATTAATATTATTATTATATATTTATGAACATTTATCCTCATTTTATTCAACCTTATCTTGTATTGTGTACAA
TATTTATATCTATTAAATTTACTTTTCCCCTTTCTACTTATATATAACCCTGTCCAATTTTTTATCAGTAAACTATCATCCTTTTAATTCTTATGTATTT
TAATTTTATTTTCCACTATAGATCTTTTATTACATTTATTTTTTTCCTCATTACCTATCATTCAATTAGTACTTTCTTATTCTTATTACTAATTCG
>SL_EcoRI0010D20_SP6_290767 (trimmed for quality and cloning vector)
CTTTACAAGGGGCCGAAATATTACTCGAATTGTATGTATAATTATAGGAGAGCTCAATCAACGATAGGTGATCATCTCAATTTCCATTAAAATCGATAAC
ATAAGATCTTAGCATATTTCTAGAGTTTTGATGGTAAGTTTCACTTTACCATTCATTTAAGGATGAAAGATGGTGCTAAGTTGCACTTGAGTACCTAACC
CATTTTGAAAAGACCTCTATAAACGAGAAGTGAATTGGGCACCTCTATCTAAAATGAAAGACAAAGGGATCCCATGTAAGCTAACAATATCATTAATGTA
TAATCTAGCATACTCTACCATCAAATAAGTAGAGCTAATTGGGATAAAGTGGGAAAATTTCATCAACATATCTAGAATAACCCTTATTTTTTTTTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
3' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.932633
Expected error %
1.12705
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 103 E Value 2e-25 Identity 53.30% Align. Length 379bp (95.23%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 103 E Value 2e-25 Identity 53.30% Align. Length 379bp (95.23%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_EcoRI0010D20
Clone
Clone name
sle-10d20
SL_EcoRI0010D20
C01SLe0010D20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato EcoRI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pIndigoBAC-5
Accession
Heinz 1706
Restriction enzyme
EcoRI

Other Reads:
1 sequencing reads found