Clone Read SL_EcoRI0012G14_SP6_291608

Sequence Read 
Read Class
BAC ends
Read ID
SL_EcoRI0012G14_SP6_291608
Primer
SP6
ID from Seq. Facility
SL_EcoRI_012_G14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
629 trimmed for vector and quality, 908 raw
Genbank Accession
CZ961677
Sequence
>SL_EcoRI0012G14_SP6_291608 (raw untrimmed)
ATGTCCAGTCGCNGCGGTCGATCTGAGGATCCCCGGGTACCGAGCTCGAATTCACCATGGCATCGATATCCATTTAAGGGGAAAGGGAGGTGATTTTAAT
GGTTCTTACTTCAGTGGACAGGGTTCCAGAGGTTACTCAGTTCGACCCAATCAGTCTTCACTACAGACTGCAGTTGGGGGTCCACCTCAGACCGGTCAAC
ACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAAAGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCC
AATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGCAA
ACTAGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAAGGGCCTATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTG
ACGCCGCCATCGCAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTTATTTGCTAA
TGGTCTAAATTTACATTATGAATTACATGATATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGGTACTTGAAAAGTTATATAGGTCTTGTTTG
GTGAACATTGTGGGGAGCAACACTTATGTAGACTTGGGTTACTTAGAAATGGTTGAATTTGATGTAATTCTGGGTATGACTTGGCTTTTCTCGCCATTGG
CAATCTGGGATGGAACGCTTAAACCGTGACGTTAGCCCAGCTGGGAAAGATTCCGTAGTGTGGGAGGGGAATAAACTTTCAATTCGGTGCCTATCATCCC
CTTTCTCT
>SL_EcoRI0012G14_SP6_291608 (trimmed for quality and cloning vector)
CACCATGGCATCGATATCCATTTAAGGGGAAAGGGAGGTGATTTTAATGGTTCTTACTTCAGTGGACAGGGTTCCAGAGGTTACTCAGTTCGACCCAATC
AGTCTTCACTACAGACTGCAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCTAGAGAAAGTTATGGATGTGGGGA
GACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGT
GGTGGTCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTGATGGGCAAACTAGAGCCACTACATCACAACATGGTAGGGGCAACAGACAAACAAACGAAA
GGGCCTATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGACGCCGCCATCGCAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATT
GTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTTATTTGCTAATGGTCTAAATTTACATTATGAATTACATGATATGCCTATTCATGTTTCTACT
CCGGTGGGTGAGTCTGTGGTACTTGAAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
3' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.976911
Expected error %
0.884429
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA73301.1| Score 159 E Value 7e-38 Identity 27.70% Align. Length 281bp (44.67%) Frame 2
hypothetical protein [Zea mays] pir||T03397 hypothetical protein - maize (fragment)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 86 E Value 9e-16 Identity 12.90% Align. Length 590bp (93.80%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone SL_EcoRI0012G14
Clone
Clone name
sle-12g14
SL_EcoRI0012G14
C01SLe0012G14
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato EcoRI BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pIndigoBAC-5
Accession
Heinz 1706
Restriction enzyme
EcoRI

Other Reads:
1 sequencing reads found