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SGN Marker SSR601

SGN-M1274

SynonymsNone
Locus associationsNone
SSR info 

Annealing temperatures: Low: 45 High: 50
Repeat motif: ATA   Repeat number: 9
Repeat motif:    Repeat number:
Forward primer: TCTGCATCTGGTGAAGCAAG
Reverse primer: CTGGATTGCCTGGTTGATTT
Predicted size: 166
Derivations 
This marker was derived from EST read SGN-E120083
Mapped locations  
Map: Sun1642 x LA1589   
Map version
85 (location: 43814)
Chromosome
3
Position
108.70 cM
Confidence
uncalculated
Protocol
SSR


Sun1642 x LA1589

PCR data   Exp. ID 44829
Forward primer (5'-3')
TCTGCATCTGGTGAAGCAAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
CTGGATTGCCTGGTTGATTT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589   
Map version
79 (location: 43274)
Chromosome
3
Position
99.20 cM
Confidence
uncalculated
Protocol
SSR


Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589

PCR data   Exp. ID 44643
Forward primer (5'-3')
TCTGCATCTGGTGAAGCAAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
CTGGATTGCCTGGTTGATTT
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPIMP 2008   
Map version
55 (location: 40805)
Chromosome
3
Position
112.00 cM
Confidence
uncalculated
Protocol
SSR


Tomato-EXPIMP 2008

Map: Tomato-EXPEN 2000   
Map version
52 (location: 39276)
Chromosome
3
Position
162.00 cM
Confidence
F(LOD3)
Protocol
SSR


Tomato-EXPEN 2000
Other PCR data 
PCR data   Exp. ID 14096
Forward primer (5'-3')
TCTGCATCTGGTGAAGCAAG
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
CTGGATTGCCTGGTTGATTT
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 160+166
Solanum lycopersicum LA925: 166
 Approximate temperature
60°C
  
Overgo hybridization and physical mapping 
SSR601 was used as an overgo probe on plate 2 [well D4]

Plausible BAC Matches:   None

 Overgo Sequences

A sequence
CCCTTTTTGGGACCAATCATGTGG
B sequence
GCTTCTGGGTCTGTTACCACATGA
AB sequence
CCCTTTTTGGGACCAATCATGTGGTAACAG
Marker sequence
GAATCAGTTGGTAGATTAGCTTGAAGAGGGAGACGAAAGAGATCAAGATT
GTGATGATGAAAGATTTAATGAATCAACAAGCTCAAGTACCTGGTGTTGT
TATGGAGGAGAACATGTCCAATTTAACTTCTGCATCTGGTGAAGCAAGTG
TATCTTCTTCGAACCGAAATGATAATAATAATAATAATAATAATAATATT
TATCCTCATCATCAGTATAACTTTGCTCCTCCAAATCAACAAACTCAACC
TGCACAACAAATCAAGAAGAAGAGAAATCAACCAGGCAATCCAGGTTTGA
ATTCAAAGCTTTTTGAAGTACTTTTGTTATATGCTTTTTTTTGGGTTATG
AAATCCTTTCAACTTTTTCTTTTCCCCTTTTTGGGACCAATCATGTGGTA
ACAGACCCAGAAGCTGAAGTGATAGCTTTGTCACCAAAGACACTAATGGC
AACCAATAGATTTGTTTGTGAAATCTGTAACAAAGGATTTCAAAGAGATC
AGAACCTGCAGCTTCACAGAAGAGGACACAACTTGCCATGGAAGCTCAAG
CAAAGAACAAGCAAAGAAATAAGAAAAAAAGTGTATGTTTGCCCAGAAAC
TAGCTGTGTTCATCATGACCCAGCAAGAGCTCTGGGAGATCTCACTGGAA
TC
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of SSR601  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1274 marker 1274
User comments 
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