SGN Marker T0635
SGN-M1512
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 1.07.01
Tomato EST read: TMEAH31TH
Arabidopsis best BAC match: AB006704.1
Arabidopsis position: 5.0190000
Arabidopsis identities: 0.871
Best GenBank protein hit: AAB97152.1
Evalue: 3.0e-57
Identities: 0.914
Description: Mg protoporphyrin IX chelatase [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAH31TH
Arabidopsis best BAC match: AB006704.1
Arabidopsis position: 5.0190000
Arabidopsis identities: 0.871
Best GenBank protein hit: AAB97152.1
Evalue: 3.0e-57
Identities: 0.914
Description: Mg protoporphyrin IX chelatase [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Potato meta-QTL consensus map |
| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Eggplant-COSII |
| ![]() Pepper-COSII |
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| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
Other PCR data |
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Overgo hybridization and physical mapping |
T0635 was used as an overgo probe on plate 7 [well E7]
Plausible BAC Matches: P149A16, P206I23, P099P20, P025H22, P123C09, P114C15, P116I09, P004N07, P062J03, P209A01
Overgo Sequences
A sequence
CACTCGGAATTGATGGTCGTGAAG
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B sequence
AAGACCCTAGTAGCTGCTTCACGA
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AB sequence
CACTCGGAATTGATGGTCGTGAAGCAGCTA
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Marker sequence
TGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAA
AAACACTCGGAATTGATGGTCGTGAAGCAGCTACTAGGGTCTTCTCAAAC GCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATC ATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGGGCCGGAAGTCAT TTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAA GATTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGA CTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATC CA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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