Sol Genomics Network

SGN Marker T0635

SGN-M1512
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

Synonyms

None

Locus associations

None

COS information

MIPS Category: 1.07.01
Tomato EST read: TMEAH31TH
Arabidopsis best BAC match: AB006704.1
Arabidopsis position: 5.0190000
Arabidopsis identities: 0.871
Best GenBank protein hit: AAB97152.1
Evalue: 3.0e-57
Identities: 0.914
Description: Mg protoporphyrin IX chelatase [Nicotiana tabacum]
Comment:
More information about COS markers can be found on the COS markers page.

Mapped locations

Map: Potato meta-QTL consensus map
Map version 107 (location: 53146)
Chromosome 4
Position 25.23 cM
Confidence uncalculated
Protocol unknown

Potato meta-QTL consensus map

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49529)
Chromosome 4
Position 6.04 MB
Confidence uncalculated
Protocol unknown

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47463)
Chromosome 4
Position 35.78 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Eggplant-COSII
Map version 63 (location: 42378)
Chromosome 11
Position 98.70 cM
Confidence F(LOD3)
Protocol RFLP

Eggplant-COSII

Map: Pepper-COSII
Map version 58 (location: 41619)
Chromosome 5
Position 11.10 cM
Confidence I
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43587

Forward primer (5'-3')

TCAACCAACAACAAGGGTCA

Accessions and product sizes

Approximate temperature

60°C

Reverse primer (5'-3')

CCAGGAGCATCACAGTCAAA

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 39382)
Chromosome 4
Position 55.00 cM
Confidence F(LOD3)
Protocol RFLP

Tomato-EXPEN 2000

Map: Eggplant-LXM 2002
Map version 29 (location: 10679)
Chromosome 11
Position 99.00 cM
Confidence F(LOD3)
Protocol RFLP

Eggplant-LXM 2002

Other PCR data

PCR data Exp. ID 14101
Forward primer (5'-3') TCAACCAACAACAAGGGTCA		Mg⁺² concentration Unknown
Reverse primer (5'-3') CCAGGAGCATCACAGTCAAA	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 900 Solanum lycopersicum LA925: 900	Approximate temperature 60°C

Overgo hybridization and physical mapping

T0635 was used as an overgo probe on plate 7 [well E7]

Plausible BAC Matches: P123C09, P209A01, P004N07, P062J03, P206I23, P114C15, P116I09, P099P20, P149A16, P025H22

Overgo Sequences

A sequence

CACTCGGAATTGATGGTCGTGAAG

B sequence

AAGACCCTAGTAGCTGCTTCACGA

AB sequence

CACTCGGAATTGATGGTCGTGAAGCAGCTA

Marker sequence

TGAACCGGAAGACCAAAACTTTGTCAGGAAACATGCACTAGAACAGGCAA
AAACACTCGGAATTGATGGTCGTGAAGCAGCTACTAGGGTCTTCTCAAAC
GCTTCGGGTTCTTACTCTTCCAACATCAACCTAGCTGTTGAGAACTCATC
ATGGAACGACGAGAAGCAACTTCAAGACATGTACTTGGGCCGGAAGTCAT
TTGCATTTGACTGTGATGCTCCTGGTGCTGGCATGATGGAGAAGAGGAAA
GATTTTGAGATGGCTCTAAGCACAGCTGATGCCACGTTCCAGAACCTCGA
CTCATCAGAAATTTCACTCACAGACGTTAGTCACTACTTCGATTCAGATC
CA

Genomic location of T0635

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1512 marker 1512