SGN Marker T0649
SGN-M1522
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 98
Tomato EST read: TMEAH49TH
Arabidopsis best BAC match: AB025639.1
Arabidopsis position: 3.0800000
Arabidopsis identities: 0.846
Best GenBank protein hit: BAB01322.1
Evalue: 1.9e-72
Identities: 0.775
Description: "dehydrogenase-like protein [Arabidopsis thaliana] /e-24, 3-hydroxyisobutyrate dehydrogenase [Aquifex aeolicus]"
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAH49TH
Arabidopsis best BAC match: AB025639.1
Arabidopsis position: 3.0800000
Arabidopsis identities: 0.846
Best GenBank protein hit: BAB01322.1
Evalue: 1.9e-72
Identities: 0.775
Description: "dehydrogenase-like protein [Arabidopsis thaliana] /e-24, 3-hydroxyisobutyrate dehydrogenase [Aquifex aeolicus]"
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T0649 was used as an overgo probe on plate 6 [well F6]
Plausible BAC Matches: P121N13, P258K16, P175E06, P139D08, P258C16, P210L12, P321O15, P321O23
Overgo Sequences
A sequence
GAAAAGCAATGGCGGTGAACTTGC
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B sequence
TTGAAACCATGGCGCAGCAAGTTC
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AB sequence
GAAAAGCAATGGCGGTGAACTTGCTGCGCC
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Marker sequence
GAATGGAGGAAATAGGGTTTCTAGGGATTGGTATTATGGGAAAAGCAATG
GCGGTGAACTTGCTGCGCCATGGTTTCAAGGTTACTGTTTGGAATCGCAC CCTCTCCAGGTGTGATGAGCTAGTGCAACATGGAGCCTCTGTTGGAGAAA CTCCTGCAGCAGTAATCAAGAAATGCAAGTATACAATTGCAATGTTGTCT GATCCAGCTGCAGCTCTTTCAGTGGTTTTTGACAAACACGGAGCACTTGA GCACGTATGTGCCGGAAAGGGCTATATAGACATGTCAACCGTTGATGCTG ATACTTCTTCACAGATTAGCCAGGCCATTACATCAAAGGGTGGTTCATTC CTTGAAGCTCCAGTTTCAGGGAGCAAAAAGCCAGCTGAAGATGGACAACT AGTAATCCTAGCAGCTGGTGACAAGGATCTGTACGATCAAGTAGTACCTG CTTTTGATGTCCTGGGAAAGAAATCTTTTTTCTTGGGAAAGATTGGGAAT GGAGC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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