SGN Marker T0671
SGN-M1534
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
| Synonyms |
| Locus associations |
| COS information |
MIPS Category: 11.07.03
Tomato EST read: TMEAH96TH
Arabidopsis best BAC match: AB023041.1
Arabidopsis position: 3.0820000
Arabidopsis identities: 0.766
Best GenBank protein hit: BAA90524.1
Evalue: 1.6e-26
Identities: 0.732
Description: peroxiredoxin Q [Sedum lineare]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TMEAH96TH
Arabidopsis best BAC match: AB023041.1
Arabidopsis position: 3.0820000
Arabidopsis identities: 0.766
Best GenBank protein hit: BAA90524.1
Evalue: 1.6e-26
Identities: 0.732
Description: peroxiredoxin Q [Sedum lineare]
Comment:
More information about COS markers can be found on the COS markers page.
 Mapped locations
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Mapped locations
|  Eggplant-COSII |
|  Tomato-EXPEN 2000 |
|  Eggplant-LXM 2002 |
| Overgo hybridization and physical mapping |
T0671 was used as an overgo probe on plate 8 [well C9]
Plausible BAC Matches: None
Overgo Sequences
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A sequence
TCTATCGGGCTCTGTAAAACACAC
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B sequence
GAGCAGAGAAGGAAGAGTGTGTTT
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AB sequence
TCTATCGGGCTCTGTAAAACACACTCTTCC
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Marker sequence
AAAATGGCTTCTCTATCGGGCTCTGTAAAACACACTCTTCCTTCTCTGCT
CCAATATGCTCAAACCCCAAAAAAACCCATCTCCCAAAACCTTACCATTG TCTCCAGATCATCACAATCCCATTTTTATGGCCTTGAAGTCCTTCATTCA CCTTCTTTTTCAACCCCATCTTCTTCAAGAACTTCAATTGTTGCTAAGGC GAATAAAGGTTCAGCGCCTCCACCATTCACATTGAAAGATCAAGATGGAA AAAATGTGAGTCTCTCCAAGTTTAAAGGAAAGCCTGAGGTGGTTTATTTC TACCCTGCTGATGAAACTCCTGGGTGCACCAAACAGGCATGTGCCTTCAG GGACTCTTATG |
| Related Markers
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of T0671
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| User comments |
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