SGN Marker T1013
SGN-M1707
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 4.05.01.01
Tomato EST read: TRXAW10TH
Arabidopsis best BAC match: AB007651.1
Arabidopsis position: 5.0300000
Arabidopsis identities: 0.894
Best GenBank protein hit: CAB76908.1
Evalue: 4e-109
Identities: 0.951
Description: putative Ruv DNA-helicase [Cicer arietinum]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRXAW10TH
Arabidopsis best BAC match: AB007651.1
Arabidopsis position: 5.0300000
Arabidopsis identities: 0.894
Best GenBank protein hit: CAB76908.1
Evalue: 4e-109
Identities: 0.951
Description: putative Ruv DNA-helicase [Cicer arietinum]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1013 was used as an overgo probe on plate 1 [well D3]
Plausible BAC Matches: P095F10, P127G12, P074J06, P019M07
Overgo Sequences
A sequence
AGGAGAGGTGACTGAACTATCTCC
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B sequence
ACTCTCACCCTCTTCTGGAGATAG
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AB sequence
AGGAGAGGTGACTGAACTATCTCCAGAAGA
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Marker sequence
GAAGAAAATGGCTGGGCGGGCTTTACTGCTAGCTGGTCCGCCTGGTACGG
GGAAGACAGCTCTTGCTCTTGGTATATCACAAGACCTTGGAAGCAAGGTT CCATTTTGTCCAATGGTTGGGTCCGAAGTGTATTCATCAGAAGTGAAGAA AACTGAGGTCTTAATGGAAAACTTCCGGCGAGCTATTGGTCTCCGTATGA AGGAAAATAAGGAAGTTTATGAAGGAGAGGTGACTGAACTATCTCCAGAA GAGGGTGAGAGTGTGACAGGTGGATATGGTAAAAGCATTAGCCATGTTAT AATTGGGTTAAAAACTGTCAAAGGTACCAAACAGTTGAAGCTTGACCCCA CGATATATGATGCCATAATTAAAGAGAAGGTAGCTGTTGGTGATGTCATT TACATTGAATCAAACAGTGGAGCAGTTAAAAGAGTGGGCAGGAGTGATGC TTTTGCCACAGAATTTGATCTTGAGGCAGAAGAGTATGTTCCACTTCCTA AAGGAGAGGTTCACAAGAAGAAGGAAATAGTCCAGGATGTTACATTGCAT GATCTTGATGCTGCAAATGCACGGCCACAAGGAGGACAAGATATATTGTC CCTTATGGGTCAAATGATGAAACCTA |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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