Sol Genomics Network

SGN Marker T1093

SGN-M1758
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis

Synonyms

None

Locus associations

None

COS information

MIPS Category: 1.07.01
Tomato EST read: TFBAU10THC
Arabidopsis best BAC match: AL078467.1
Arabidopsis position: 4.1400000
Arabidopsis identities: 0.809
Best GenBank protein hit: AAF82471.1
Evalue: 2e-119
Identities: 0.995
Description: light dependent NADH:protochlorophyllide oxidoreductase [Lycopersicon esculentum]
Comment: chlorophyll biosynthesis
More information about COS markers can be found on the COS markers page.

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 39495)
Chromosome 12
Position 54.00 cM
Confidence I
Protocol RFLP

Tomato-EXPEN 2000

Overgo hybridization and physical mapping

T1093 was used as an overgo probe on plate 5 [well D2]

Plausible BAC Matches: P099L08, P225F05, P180P04, P218M01, P180J10, P281B12, P017I24, P201G12, P294A09, P033A13, P090H01

Overgo Sequences

A sequence

TAATCACTGGAGCGTCTTCAGGAC

B sequence

GCTGTAGCTAGTCCTAGTCCTGAA

AB sequence

TAATCACTGGAGCGTCTTCAGGACTAGGAC

Marker sequence

TCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTT
TCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTT
TCTCTATTCCAAAGGAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGT
CTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTC
ATTCAAAATCAAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCG
AGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAG
AAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACT
AGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAA
TTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCA
GGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCT
TGACAGCGTCAGACAATTTGTCGATAACTNTAGGAGATCAGGCAATCCTC
TTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAG
CCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCT
TGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTG
ATTACCCTTCAAAGAGACTCATCATTG

Genomic location of T1093

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D1758 marker 1758