SGN Marker T1093
SGN-M1758
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 1.07.01
Tomato EST read: TFBAU10THC
Arabidopsis best BAC match: AL078467.1
Arabidopsis position: 4.1400000
Arabidopsis identities: 0.809
Best GenBank protein hit: AAF82471.1
Evalue: 2e-119
Identities: 0.995
Description: light dependent NADH:protochlorophyllide oxidoreductase [Lycopersicon esculentum]
Comment: chlorophyll biosynthesis
More information about COS markers can be found on the COS markers page.
Tomato EST read: TFBAU10THC
Arabidopsis best BAC match: AL078467.1
Arabidopsis position: 4.1400000
Arabidopsis identities: 0.809
Best GenBank protein hit: AAF82471.1
Evalue: 2e-119
Identities: 0.995
Description: light dependent NADH:protochlorophyllide oxidoreductase [Lycopersicon esculentum]
Comment: chlorophyll biosynthesis
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1093 was used as an overgo probe on plate 5 [well D2]
Plausible BAC Matches: P090H01, P225F05, P201G12, P099L08, P218M01, P033A13, P281B12, P294A09, P180J10, P180P04, P017I24
Overgo Sequences
A sequence
TAATCACTGGAGCGTCTTCAGGAC
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B sequence
GCTGTAGCTAGTCCTAGTCCTGAA
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AB sequence
TAATCACTGGAGCGTCTTCAGGACTAGGAC
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Marker sequence
TCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTT
TCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTT TCTCTATTCCAAAGGAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGT CTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTC ATTCAAAATCAAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCG AGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAG AAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACT AGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAA TTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCA GGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCT TGACAGCGTCAGACAATTTGTCGATAACTNTAGGAGATCAGGCAATCCTC TTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAG CCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCT TGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTG ATTACCCTTCAAAGAGACTCATCATTG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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