SGN Marker T1315
SGN-M1919
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 11.05.03
Tomato EST read: TPTAN01TH
Arabidopsis best BAC match: AC007233.6
Arabidopsis position: 2.0300000
Arabidopsis identities: 0.715
Best GenBank protein hit: AAD26909.1
Evalue: 4.8e-73
Identities: 0.680
Description: "putative beta-1,3-glucanase [Arabidopsis thaliana]"
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAN01TH
Arabidopsis best BAC match: AC007233.6
Arabidopsis position: 2.0300000
Arabidopsis identities: 0.715
Best GenBank protein hit: AAD26909.1
Evalue: 4.8e-73
Identities: 0.680
Description: "putative beta-1,3-glucanase [Arabidopsis thaliana]"
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1315 was used as an overgo probe on plate 10 [well B2]
Plausible BAC Matches: None
Overgo Sequences
A sequence
ACCGAAAGAAGACCTCACCGTCTT
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B sequence
GAAAAGAGCGAAGAGGAAGACGGT
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AB sequence
ACCGAAAGAAGACCTCACCGTCTTCCTCTT
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Marker sequence
GACGACACCGAAATCGGCGCTTCCGTCGACAACGCCGCGTCGTACAACGG
AAACCTCGTCCGGCGGATACTTATCGGTGGAGGAACCCCTTTGAGACCGA AAGAAGACCTCACCGTCTTCCTCTTCGCTCTTTTCAACGAGAACAAAAAA CCGGGTCCAACTTCCGAGAGAAACTTCGGGTTGTTCTACCCAAATGAGCG AAAAGTTTACAACATACCATTAACAATGGAAGGTTTAAAGCATTACGTTG ACCGGCGGTCACCGGCGGCCGGCGAGCAGAGAACGCAGAAAGGCGGGAAG GTGAATGTGTCAGGGCAAACATGGTGCGTAGCGAGTGGAGAAGCGGAGAA GGATCACCTACAAGCAGCTCTAGATTATGCTTGTGGTGAGGGTGGAGCAG ATTGCCGTTCGATTCAACCAGGTTCCACGTGTTACAATCCTAACACGTTA GAGGCTCATGCATCATTCGCTTTTAATAGTTATTATCAGAAAAAAGGCCG TGCGATGGGTTCGTGTTATTTTGGTGGGGCCGCATTCATTGTTCATCAAC AACCTAAGTATGGACACTGTGAATTACCAACTGAAGAATGAGTAGAGGGG TGGGGATAGACTGAATTTTGAT |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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