SGN Marker T1434
SGN-M2000
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 1.07.01
Tomato EST read: TPTAT35TH
Arabidopsis best BAC match: AC013289.9
Arabidopsis position: 1.1353000
Arabidopsis identities: 0.961
Best GenBank protein hit: AAF22911.1
Evalue: 4.8e-56
Identities: 0.757
Description: putative aminolevulinate dehydratase; 38705-36189 [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAT35TH
Arabidopsis best BAC match: AC013289.9
Arabidopsis position: 1.1353000
Arabidopsis identities: 0.961
Best GenBank protein hit: AAF22911.1
Evalue: 4.8e-56
Identities: 0.757
Description: putative aminolevulinate dehydratase; 38705-36189 [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1434 was used as an overgo probe on plate 13 [well H8]
Plausible BAC Matches: P257A02, P202G09, P257A01, P184L22, P186L17, P170C07, P022H14, P168N16, P177B24, P076L05, P111O17, P293J17, P244J03, P037O11, P186M17, P284D11, P309P02, P210B22
Overgo Sequences
A sequence
GAGGGTGTTGACCATTAGAGCTAG
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B sequence
ATCATGCCCTTCCTTGCTAGCTCT
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AB sequence
GAGGGTGTTGACCATTAGAGCTAGCAAGGA
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Marker sequence
GCTTATCTGAGCAATCATGGCTTCTGCGGCAATGTTGAACGCACCTTGTA
ATATTGGAGCTGTAAAGTTTGAGGTGAAACTGAAGCCGTCGCCAAATTTG TTTTGTGCACGGCCTTCTATTAAGTTGAATCAAAGGAGGGTGTTGACCAT TAGAGCTAGCAAGGAAGGGCATGATAATGGGTCTAGCTCAAGGCCCTTGA GAAAGATGGGGTTGACTGATGAGGAGTGTGAGGCTGCTGTAGTTGCCGGA AATGTACCTGAAGCTCCTCCGGTTCCACCAAAGCCGGCTGCACCTGCCGG TACCCCTATTGTGTCTTCACTGCCAATTAATAGGAGACCACGCCGTAATC GTAGGTCGTCAGCAGCAAGAGCTGCATTCCACGAAACAAATATAAGCCCT GCAAATCTTGTATATCCACTATTTATTCATGAGGGTGAAGAGGACACACC TATTGGAGCAATGCCTGGATGTTATAGGCTTGGATGGAGGCATGGTCTTG TTGAAGAGGTCGCAAAGGCAAGGGATGTTGGAGTCAACAGCATTGTGCTC TTCCCAAAAGTTCCAGATGCTTTAAAGACCTCTACAGGAGATGAAGCTTA CAATGACAATGGATTAGTGCCCCGAACAATACGTTTGCTGAAAGACAAAT ACCCTGATCTTGGTATCTACACTGATG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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