SGN Marker T1449
SGN-M2010
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TPTAT92TH
Arabidopsis best BAC match: AB020745.1
Arabidopsis position: 5.1760000
Arabidopsis identities: 0.695
Best GenBank protein hit: BAA96959.1
Evalue: 6.7e-46
Identities: 0.549
Description: similar to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TPTAT92TH
Arabidopsis best BAC match: AB020745.1
Arabidopsis position: 5.1760000
Arabidopsis identities: 0.695
Best GenBank protein hit: BAA96959.1
Evalue: 6.7e-46
Identities: 0.549
Description: similar to unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
| ![]() Tomato-EXPEN 2000 |
Overgo hybridization and physical mapping |
T1449 was used as an overgo probe on plate 3 [well F2]
Plausible BAC Matches: None
Overgo Sequences
A sequence
GGAGAAGCATAGGAACCCTTGTTC
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B sequence
GACAGTTGGTTCCACAGAACAAGG
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AB sequence
GGAGAAGCATAGGAACCCTTGTTCTGTGGA
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Marker sequence
GCAAACCCAAAATGGTCTAAAATCTCCGGCGTAATTTGCCGCCGACACCT
CTTCTTCGCCTATCGCCGCCTACGCCGATCGTGGAGTTTTGCCATGGAAG ATACACAATCAGTTGCAACATTGATGGACTCTACAACATCTAAGATACAG CAACTACAGAAAGCATTCGCTGAGTTGGAAAGTCACCGTGCTGTTACTCT CAACCTGCAGTGGAAGCAACTTGAAGAGCACTTTAATGGGCTTCAGAAAT CCTTGAAGAGGCGTTTCACTGAACTAGAAGACCAAGAGAAAGAGTTCGAG ACAAAAATTGTTCAATCTACAGAGATATTGGAGAAGCGTCAAGCAGCTGT TATTGCTAAAGAGCAAGCTTCTCTTCAGAGGCTCCAGGAGAAAAGAGATG CAGCAGTTTCTGCCATTTCAATTGCTTTGGAGAAGCATAGGAACCCTTGT TCTGTGGAACCAACTGTCATTAATTGTGTAGTTGAAGACGAGCCATCTGT TCTGGAAGAGAAACCCGATAATTTAACAGAAATTGGGCTTGTTACAGGGG ATACATGGAAATCTTTTCAGGATAGTGTTGTGGAAGTTAAGTCTTATCCA GAGCTAGTTAATCTATGCCGAAATATGG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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