SGN Marker T1738
SGN-M2235
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
COS markers are Conserved Ortholog Set - orthologs between tomato and arabidopsis
Synonyms |
Locus associations |
COS information |
MIPS Category: 99
Tomato EST read: TRZBJ56TH
Arabidopsis best BAC match: AB025629.1
Arabidopsis position: 3.0600000
Arabidopsis identities: 0.698
Best GenBank protein hit: BAB02479.1
Evalue: 1.2e-45
Identities: 0.477
Description: unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
Tomato EST read: TRZBJ56TH
Arabidopsis best BAC match: AB025629.1
Arabidopsis position: 3.0600000
Arabidopsis identities: 0.698
Best GenBank protein hit: BAB02479.1
Evalue: 1.2e-45
Identities: 0.477
Description: unknown protein [Arabidopsis thaliana]
Comment:
More information about COS markers can be found on the COS markers page.
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| ![]() Tomato-EXPEN 2000 |
Other PCR data |
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Overgo hybridization and physical mapping |
T1738 was used as an overgo probe on plate 7 [well H5]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
CAGCAGAGACAATAGCAGCAGTAG
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B sequence
AGGACTTAGGCCCATACTACTGCT
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AB sequence
CAGCAGAGACAATAGCAGCAGTAGTATGGG
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Marker sequence
GGTTGGTATGGAAGGTCTGCAGATCTTAAAACCACGTTCTCCACATAGTA
TCAGGCAAGATAGTCCTGAAGGACCTCTTAAAGAGACTGCTGAGAGATTT GGTGGTATGAACATCGAAGTAGACATAGTGAATTGCGAAGACGATATTGA TGATGGATTGGGAAAGTGGATTGTCGAAAATTTGAAATTTTCTGTCAAAC AGCCGATCGAGGCAGTAGTGACTAAGGCTGAGCTCAAGTATCTTGCTTTC TTGTGCAAGTCTGAGGTTGACTCCATGGGTCGGATTGCCGCTGGAATTCT GCGGGTACTTAAGTTAGAAAATAAAATTGGCGCAGGAGCAATCAGTCAAC TAAGTAACTTAGGAAGTGAAAGCTTTGATAGAATATTTACTCCTGAAAAA CTCAGCAGAGACAATAGCAGCAGTAGTATGGGCCTAAGTCCTTCGTCAAA TATCACTGGTGGAAGCCGAAACCCATATCTTGAGTCAACAGTAGCTTCTC TTGAGGACATGATCAAGGAATCACAGACCAAATGTTCTTCTTTAAGTGTT GAACTAGCTAATTCAACATCTTCTCTCGATGACGTTAAAGAGCTGAGTCA GAAACTGGAGAACATGCAGAAATTATTGATGCAATTGCGAACTCAAG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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