SGN Marker C2_At1g30580
SGN-M3811
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
Synonyms |
Locus associations |
Orthologs in this COSII group |
Species | Copies | Sequence ID | CDS/Edited sequence | Peptide sequence | Predicted introns |
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Coffee | Single | 312242 (SGN) 126015 (CGN) | - | - | - |
Capsicum annuum | Single | SGN-U196800 | - | - | - |
Lycopersicon Combined | Single | SGN-U214195 | - | - | - |
Solanum tuberosum | Multiple | SGN-U243857 | - | - | - |
Arabidopsis | Single | At1g30580 on TAIR | - | - | - |
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| ![]() Eggplant-RAD 2012 |
| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Tobacco N. tomentosiformis |
| ![]() Tomato-EXPEN 2000 |
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| ![]() Arabidopsis COSII |
Other PCR data |
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Unigene blast matches for primers |
Overgo hybridization and physical mapping |
C2_At1g30580 was used as an overgo probe on plate 12 [well F11]
Plausible BAC Matches: P057M14, P241L04, P279K10, P049P10, P119B17, P263O02
Overgo Sequences
A sequence
GGAGAGAAACCTTGCTGATATGCC
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B sequence
TGCTGCTTCATCTGGTGGCATATC
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AB sequence
GGAGAGAAACCTTGCTGATATGCCACCAGA
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Marker sequence
ANNNNNTGCCACCAAAAGCAGCTAAAGGTAAAGAAGTTCCTGCCGAAAGG
CCGATTCTTGGCCGTTTCTCATCCCACTTGAAAATTGGAATCGTNNNNNA GGATTACCCAATGTGGGGAAGTCTACTCTCTTCAACACACTGACAAAGTT ATCCATTCCGGCAGAAAACTTTCCTTTTTGTACTATTGAGCCTAATGAAG CTCGAGTGCACGTTCCTGATGAGCGTTTTGAATGGCTCTGTCAACTTTAC AAGCCCAAGAGTGAGNNNNNGTGGCTGCCTTTTTGGAAATTCATGACATA GCTGGACTTGTTCGAGGTGCTCATGCAGGACAAGGATTGGGGAACAGTTT CTTATCCCACATCCGCGCAGTTGACGGCATTTTCCATGTTCTACGCNNNN NGCATTTGAAGATCCAGATATTATCCATGTTGATGACACTGTTGATCCTG TGAGAGACTTAGAGGTTATAAGTGAGGAACTAAGGCTTAAGGNNNNNACA TCGAGTTCATGGAGAGAAGGATAGAAGATCTTGATAAGAGTATGAAGAGA AGCAATGACAAACAATTGAAAATAGAGCATGAATTATGTCTAAGGGTCNN NNNAAAGCATCACTCCAGGAAGGCAAAGATGTTCGTCTGGGGGACTGGAA AGCTGCAGATGTTGAATTCTTGAATACCTTCCAGCTCCTTACTGCAAAAC CAATTGTTTACTTGNNNNNGTNNNNNTAATATGAATGAGAAAGACTATCA AAGGAAAAAGAACAAGTTTCTGCCGAAGATTCATGCATGGNNNNNGTGCA GGAGCACGGTGGTGAAATAATTATTCCTTTCAGTGCTGCTGTGGAGAGAA ACCTTGCTGATATGCCACCAGATGAAGCAGCAAAATACTGTGAAGAGAAC AAGTTACAAAGNNNNNTTGCCTCCCAAAGATCATTAAGACTGGATTTGCA GCCATTAATCTTATTTATTTCTTCACAGCAGGGCCAGATGAGGTNNNNNT AAATGCTGGCAAATCCGCAGGCTGATGAAGGCTCCTCAAGCTGCTGGAAC AATTCATACAGATTTTGAGAGAGGGTTCATCTGTGCTGAGGTNNNNNGAT GAAATTTGAAGATCTAAAGGAACTTGGTAGTGAATCGGCTGTTAAGGNNN NNCTGCTGGGAAGTATAAGCAGGAGGGTAAGACCTATGTGGTCCAAGATG GTGATATTATATTCTTCAAGTTCAATGTCTCTGGGGGTGGGAAGAAGTGA |
Universal primers for Asterid species |
No additional PCR data found.
Other COSII sequence data |
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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