SGN Marker TG201
SGN-M391
Synonyms |
Locus associations |
RFLP details |
Insert size
540
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image |
Forward sequence
AATACCAAGATTTAGAAAGCTGGTATCTTTCTTTCTTGCCTACAACAACCTCCGTTAGTTCTCGTGAGGCACCACGTTTGATATATTCCT
ATCGAAATGTCTTAACAGGCTTTGCAGCTAAGTTATCAGAAGAAGATATAAAGGAAATGGAAAAAAAGGAAGGATTTGTTTCTGCACGCC CCCAGCAGTTTGTTAGTTTACACACCACACATAGTGTCAATTTCTTGGGATTGCAACAGAACATGGGGTTCTGGAAAGACTCTAATTATG GGAAAGGTGTGATCATCGGAGTTCTAGACACTGGAATTCTTCCTGACCATCCTTCATTTAGTGACGTTGGGATGCCTACCCCACCTGCTA AGTGGAAAGGAGTTTGTGAGTCAAATTTTATGAACAAGTGTAACAAAAAGCTCATTGGAGCGAGGTCTTACCAACTTGGCAATGGTTCCC CGATAGATGGTAATGGACACGGTACACACACAGCAAGCACAGCTGCAGGCATG |
Reverse sequence
CTCACTATAGGGAGACAGCCTGCATGCCTACAGCTGTGCTTGCTGTGTGTGTACCGTGTCCATTACCATCTATCGGGGAACCATTGCCAA
GTTGGTAAGACCTCGCTCCAATGAGCTTTTTGTTACACTTGTTCATAAAATTTGACTCACAAACTCCTTTCCACTTAGCAGGTGGGGTAG GCATCCCAACGTCACTAAATGAAGGATGGTCAGGAAGAATTCCAGTGTCTAGAACTCCGATGATCACACCTTTCCCATAATTAGAGTCTT TCCAGAACCCCATGTTCTGTTGCAATCCCAAGAAATTGACACTATGTGTGGTGTGTAAACTAACAAACTGCTGGGGGCGTGCAGAAACAA ATCCTTCCTTTTTTTCCATTTCCTTTATATCTTCTTCTGATAACTTAGCTGCAAAGCCTGTTAAGACATTTCGATAGGAATATATCAAAC GTGGTGCCTCACGAGAACTAACGGAGGTTGTTGTAGGCAAGAAAGAAAGATACCAGCTTTCTAAATCTTGGTATT |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U173295 | 9e-06 | 77 (15.3% of RFLP seq) | + |
SGN-U163159 | 1.7e-19 | 80 (15.9% of RFLP seq) | + |
SGN-U153798 | 3.6e-42 | 150 (29.8% of RFLP seq) | + |
SGN-U173295 | 9.4e-06 | 77 (14.7% of RFLP seq) | - |
SGN-U163159 | 1.8e-19 | 80 (15.2% of RFLP seq) | - |
SGN-U153798 | 3.7e-42 | 150 (28.6% of RFLP seq) | - |
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| ![]() Tomato-EXPIMP 2009 |
| ![]() Tomato-EXPEN 1992 |
| ![]() Tomato-EXPIMP 2001 |
Overgo hybridization and physical mapping |
TG201 was used as an overgo probe on plate 12 [well A7]
Plausible BAC Matches: None
Non-Plausible BAC matches
Overgo Sequences
A sequence
CAACAACCTCCGTTAGTTCTCGTG
|
B sequence
ATCAAACGTGGTGCCTCACGAGAA
|
AB sequence
CAACAACCTCCGTTAGTTCTCGTGAGGCAC
|
Marker sequence
AATACCAAGATTTAGAAAGCTGGTATCTTTCTTTCTTGCCTACAACAACC
TCCGTTAGTTCTCGTGAGGCACCACGTTTGATATATTCCTATCGAAATGT CTTAACAGGCTTTGCAGCTAAGTTATCAGAAGAAGATATAAAGGAAATGG AAAAAAAGGAAGGATTTGTTTCTGCACGCCCCCAGCAGTTTGTTAGTTTA CACACCACACATAGTGTCAATTTCTTGGGATTGCAACAGAACATGGGGTT CTGGAAAGACTCTAATTATGGGAAAGGTGTGATCATCGGAGTTCTAGACA CTGGAATTCTTCCTGACCATCCTTCATTTAGTGACGTTGGGATGCCTACC CCACCTGCTAAGTGGAAAGGAGTTTGTGAGTCAAATTTTATGAACAAGTG TAACAAAAAGCTCATTGGAGCGAGGTCTTACCAACTTGGCAATGGTTCCC CGATAGATGGTAATGGACACGGTACACACACAGCAAGCACAGCTGCAGGC ATG |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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