SGN Marker C2_At3g44890
SGN-M4657
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species
Synonyms |
Locus associations |
Orthologs in this COSII group |
Species | Copies | Sequence ID | CDS/Edited sequence | Peptide sequence | Predicted introns |
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Coffee | Single | 310069 (SGN) 126194 (CGN) | - | - | - |
Capsicum annuum | Single | SGN-U202325 | - | - | - |
Lycopersicon Combined | Single | SGN-U222824 | - | - | - |
Arabidopsis | Single | At3g44890 on TAIR | - | - | - |
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| ![]() Tomato - Kazusa and SolCAP markers mapped to genome |
| ![]() Kazusa F2-2000 genetic map |
| ![]() Pepper-COSII |
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| ![]() Tomato-EXPEN 2000 |
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| ![]() Arabidopsis COSII |
Other PCR data |
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Unigene blast matches for primers |
Overgo hybridization and physical mapping |
C2_At3g44890 was used as an overgo probe on plate 13 [well C9]
Plausible BAC Matches: P103A03, P176A22, P163F21, P335E08
Overgo Sequences
A sequence
ATTGGAGCCTTCAAGGTGAAGCGT
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B sequence
TTCCTTTCCCACCCTTACGCTTCA
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AB sequence
ATTGGAGCCTTCAAGGTGAAGCGTAAGGGT
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Marker sequence
ATGGCGTCATGGGGTTCATCTTCTTGTCTCCAAAATTACAGCTTAACCAA
AAACCCATTTTCCGAAACAGTGAAATTTTCAGAAAGAACTTCAATTTTAA CAATTGTTGCTCAGAAAAAAGCCAAGAAAGTTCGAAAGNNNNNATAATAC TGAAAGAGGATATTTCACAGTTGGGTAAAAAGGGAGACCTTTTGGATGTT AAAGCTGGATTCTTTAGGAATTATTTGCTACCATTGGGCAAAGCTCAAAT TGTGACAGCTGCACTTATCAANNNNNGGAAATGAAGATGGAAGACGAGAA AATTGAGGCTGAAAAACAACGGNNNNNGTGAAAGATGAGGCACAACAGCT TGCTCGAATTTTTGAAACTATTGGAGCCTTCAAGGTGAAGCGTAAGGGTG GGAAAGGAAAGCAAATATTTGGAAGNNNNNTGTCACTGCTCAGGATCTCG TTGATATTATAAAAGCACAGATACAGAGNNNNNGGACGTGGACAAGAAAA TTGTCAATCTGCCTGAGATTCGAGAAACCGGAGAATATGTTGCCGAATTG AAGCTGCATCCAGAAGTTACAGCTAGAGTAAGGTTGACAGTGTATGCCAA TTGANNNNN |
Universal primers for Asterid species |
No additional PCR data found.
Other COSII sequence data |
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
Forward amplicon sequence for S. quitoense plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #1, plain text
Forward amplicon sequence for S. betaceum 04T130, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T130, plain text
Forward amplicon sequence for S. betaceum 04T132, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T132, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
Forward amplicon sequence for S. quitoense plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #1, plain text
Forward amplicon sequence for S. betaceum 04T130, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T130, plain text
Forward amplicon sequence for S. betaceum 04T132, AB1 chromatogram - [View]
Forward amplicon sequence for S. betaceum 04T132, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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