Sol Genomics Network

SGN Marker C2_At5g51110

SGN-M4733
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303201 (SGN) 125097 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U198452	-	-	-
Lycopersicon Combined	Single	SGN-U215086	-	-	-
Solanum tuberosum	Multiple	SGN-U246189	-	-	-
Arabidopsis	Single	At5g51110 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46776)
Chromosome 3
Position 27.40 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46537)
Chromosome 3
Position 34.60 cM
Confidence CF(LOD3)
Protocol dCAPS

Tobacco N. acuminata

Map: Tomato-EXPEN 2000
Map version 52 (location: 38885)
Chromosome 3
Position 75.70 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39987

Forward primer (5'-3')

TGGTGGAAGGCACAGGGCAC

Accessions and product sizes

Solanum pennellii TA56

250

Solanum lycopersicum TA209

220

Approximate temperature

55°C

Reverse primer (5'-3')

TCTTTACTTGATCTATTTTAGCAGC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

220

Solanum pennellii TA56

250

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27502)
Chromosome 5
Position 20.80 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11990
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 360	Approximate temperature 55°C

PCR data Exp. ID 11991
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 320	Approximate temperature 55°C

PCR data Exp. ID 11992
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 340	Approximate temperature 55°C

PCR data Exp. ID 13911
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 350	Approximate temperature 55°C

PCR data Exp. ID 13912
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 450	Approximate temperature 55°C

PCR data Exp. ID 13913
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13914
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 13915
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 13916
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 13917
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C

PCR data Exp. ID 13918
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Physalis TA1367: 350	Approximate temperature 55°C

PCR data Exp. ID 13919
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13920
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13921
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Coffea canephora BP409: 1000	Approximate temperature 55°C

PCR data Exp. ID 32661
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 320	Approximate temperature 55°C

PCR data Exp. ID 33287
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 340	Approximate temperature 55°C

PCR data Exp. ID 33288
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 360	Approximate temperature 55°C

PCR data Exp. ID 33289
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 33290
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 33291
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 33292
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C

PCR data Exp. ID 11993
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC	Digested band sizes (using amplicon difference) Solanum pennellii LA716: 360 Solanum lycopersicum LA925: 320	Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference All possible enzymes for lycopersicum and pimpinellifolium: amplicon difference
Accessions and product sizes Solanum lycopersicum LA925: 320 Solanum pennellii LA716: 360	Approximate temperature 55°C

Universal primers for Asterid species

No additional PCR data found.

Other COSII sequence data

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree | [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 130005 plant #3, plain text
Forward amplicon sequence for S. quitoense SE plant #1, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense SE plant #1, plain text

BLASTX result of original unigene sequences against Arabidopsis protein database

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At5g51110

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D4733 marker 4733

User comments

Please wait, checking for comments. (If comments do not show up, access them here)

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: