Sol Genomics Network

SGN Marker C2_At5g51110

SGN-M4733
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303201 (SGN) 125097 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U198452	-	-	-
Lycopersicon Combined	Single	SGN-U215086	-	-	-
Solanum tuberosum	Multiple	SGN-U246189	-	-	-
Arabidopsis	Single	At5g51110 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46776)
Chromosome 3
Position 27.40 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46537)
Chromosome 3
Position 34.60 cM
Confidence CF(LOD3)
Protocol dCAPS

Tobacco N. acuminata

Map: Tomato-EXPEN 2000
Map version 52 (location: 38885)
Chromosome 3
Position 75.70 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39987

Forward primer (5'-3')

TGGTGGAAGGCACAGGGCAC

Accessions and product sizes

Solanum pennellii TA56

250

Solanum lycopersicum TA209

220

Approximate temperature

55°C

Reverse primer (5'-3')

TCTTTACTTGATCTATTTTAGCAGC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

250

Solanum lycopersicum TA209

220

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27502)
Chromosome 5
Position 20.80 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11990
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 360	Approximate temperature 55°C

PCR data Exp. ID 11991
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 320	Approximate temperature 55°C

PCR data Exp. ID 11992
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 340	Approximate temperature 55°C

PCR data Exp. ID 13911
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 350	Approximate temperature 55°C

PCR data Exp. ID 13912
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 450	Approximate temperature 55°C

PCR data Exp. ID 13913
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13914
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 13915
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 13916
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 13917
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C

PCR data Exp. ID 13918
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Physalis TA1367: 350	Approximate temperature 55°C

PCR data Exp. ID 13919
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13920
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13921
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Coffea canephora BP409: 1000	Approximate temperature 55°C

PCR data Exp. ID 32661
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 320	Approximate temperature 55°C

PCR data Exp. ID 33287
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 340	Approximate temperature 55°C

PCR data Exp. ID 33288
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 360	Approximate temperature 55°C

PCR data Exp. ID 33289
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 33290
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 33291
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 33292
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC		Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C

PCR data Exp. ID 11993
Forward primer (5'-3') TGGTGGAAGGCACAGGGCAC	Digested band sizes (using amplicon difference) Solanum pennellii LA716: 360 Solanum lycopersicum LA925: 320	Mg⁺² concentration 3mM
Reverse primer (5'-3') TCTTTACTTGATCTATTTTAGCAGC	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference All possible enzymes for lycopersicum and pimpinellifolium: amplicon difference
Accessions and product sizes Solanum pennellii LA716: 360 Solanum lycopersicum LA925: 320	Approximate temperature 55°C