SGN Marker CT163
SGN-M572
Synonyms |
Locus associations |
RFLP details |
Insert size
800
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image |
Forward sequence
CTTTTTTTTTTTTTTTTTAACACCCAAAGAACAAAAATATATTAAGGCCTAGTGATACATCAGAGGGTACAAAATCAAATTTGCACAACT
TGAAGTACAGTCTAGCTCATTTGAGCTTTGATTAAAATTATTCCTCAATTTTTAGAGCAATCTAACAAGCTGCAAACACCTACTAACAAC TATTACAGAGTGAAATTGTGACAGATGAATTACAATCCTCATTTGGGAGGGTGACGATTGGCAATATCTGTTATCCATTGATCGCTGTAC CCAAAAAACAGAATGCATGATAGTTTTGTTTCTGCTAACACTGATACATATTTCTACAAATTGTGAAATGAAGATTTCTCTTCATTTATG TCAATATTCTGGAATCAATCCAACTCATTGTCATCATTGAATCAAGAATCTGGGTTTAAGTTACTACTTACATCTCAGTACATTGGTCGT TAACATTTGACACAAATTTAATCCCGAAGACCCAGCTCAAGCTCAAGCTCATCATC |
Reverse sequence
AAACAGGGAGATGAAAGGGGTCTCTAATGGGAGATCCATTCCCTTTCTTCTCTTCTTCCTTTCGTTTTTTCATCAATTCATCACAGGCTT
TTCAGACGATTCTTTAAATCCCAGAAATGGAACAAAAGTTGATAGTCATGCTGCATCCAGCAGTAACACTGGGTCAATTGTACTCATTGT ATGTGTTGCCCTTGTGGCAGTAGTGCTTCTATCATTTTTCCTTTTCAAGTTTTGGCAAAAGAAGAAGCGTGAAGAGCAGTATGCTCGTCT GCTAAAGTTGTTTGAAGAAGATGATGAGCTTGAGCTTGAGCTGGGTCTTCGGGATTAAATTTGTGTCAAATGTTAACGACCAATGTACTG AGATGTAAGTAGTAACTTAAACCCAGATTCTTGATTCAATGATGACAATGAGTTGGATTGATTCCAGAATATTGACATAAATGAAGAGAA ATCTTCATTTCACAATTTGTAGAAATATGTATCAGTGTTAGCAGAAACAAAACTATCATGCATTCTGTTCT |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U149510 | 1e-168 | 322 (63.6% of RFLP seq) | + |
SGN-U158342 | 4.3e-17 | 108 (20.7% of RFLP seq) | - |
SGN-U149510 | 521 (100.0% of RFLP seq) | - |
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| ![]() Tomato-EXPIMP 2009 |
| ![]() Eggplant-COSII |
| ![]() Tomato-EXPEN 2000 |
| ![]() Eggplant-LXM 2002 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
CT163 was used as an overgo probe on plate 5 [well F1]
Plausible BAC Matches: P244G10, P187O23, P226G18, P315K20, P024O06, P268G14, P122H22, P292B04, P307M14, P201L04, P313B23, P074H11, P135L24, P231O06, P120L24, P026N10
Overgo Sequences
A sequence
GACGATTGGCAATATCTGTTATCC
|
B sequence
GGGTACAGCGATCAATGGATAACA
|
AB sequence
GACGATTGGCAATATCTGTTATCCATTGAT
|
Marker sequence
CTTTTTTTTTTTTTTTTTAACACCCAAAGAACAAAAATATATTAAGGCCT
AGTGATACATCAGAGGGTACAAAATCAAATTTGCACAACTTGAAGTACAG TCTAGCTCATTTGAGCTTTGATTAAAATTATTCCTCAATTTTTAGAGCAA TCTAACAAGCTGCAAACACCTACTAACAACTATTACAGAGTGAAATTGTG ACAGATGAATTACAATCCTCATTTGGGAGGGTGACGATTGGCAATATCTG TTATCCATTGATCGCTGTACCCAAAAAACAGAATGCATGATAGTTTTGTT TCTGCTAACACTGATACATATTTCTACAAATTGTGAAATGAAGATTTCTC TTCATTTATGTCAATATTCTGGAATCAATCCAACTCATTGTCATCATTGA ATCAAGAATCTGGGTTTAAGTTACTACTTACATCTCAGTACATTGGTCGT TAACATTTGACACAAATTTAATCCCGAAGACCCAGCTCAAGCTCAAGCTC ATCATC |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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