SGN Marker TG346
SGN-M607
Synonyms |
Locus associations |
RFLP details |
Insert size
1000
|
Vector
pGEM4Z
|
Cutting Site
PST1
|
Drug Resistance
AMP
|
Image
TG346 image not available
|
Forward sequence
CTCACTATAGGGAGACAAGCCTGCATGCCTACAACACACTCATGTGGACGTCTCCCCATAGTTTTTTTGAAGACTATATCATGTAATATT
GTTGGTTATTATAAAGGAATTGTCTTTGGAAATACCCCAATCATAGCTATTCCAGATAACTTGAATGACAGAAAGATACTCGAAGTGCAG CTTTATCCCTTCTGAAACTAGTCTCCTGTGACTGACCTGACAATATTTTACTGAATTTATGGATAATTGCAGTGAATGGCGCTTTTCAAG TATAATTCTATCTAAGCAATTGTTAGAGAGTGAATTTACTGGGTCTCTGTATATACACTCAGAAGTAATAAATAGGCAACAAGATGTTTA GCTTTTATCCGTCTCTGAAATTGATCTATCAATGGGAAAAGGGCTCAAAATCCTCAGCTTAAAGCATAAATCCAGGCCAACTCCAGCAAA AAGGAAGATCAAAAGATTCTCCGAGACATAGACTGCGCCATCAAGAGCATGGGACCAGAAGCTGGCTGCATCCAACTCCAATGGTGGTCC ACCTCCAAGTGTAGCAAGGCCTGCATTG |
Reverse sequence
CTCCTATAGGGAGACAGCCTGCATGCCTGCAGCACACTCATGTGGACGCATCCCCATAGTTTTTTTGAAGACTATATCATGTAATATTGT
TTGTTATTATAAAGGAATTGTCTTTGGAAATACCCCAATCATAGCTATTCCAGATAACTTGAATGACAGAAAGATACTCGAAGTGCAGCT TTATCCCTTCTGAAACTAGTCTCCTGTGACTGACCTGACAATATTTTACTGAATTTATGGATAATTGCAGTGAATGGCGCTTTTCAAGTA TAATTCTATCTAAGCAATTGTTAGAGAGTTAATTTACTGGGTCTCTGTATATACACTCAGAAGTAATAAATAGGCAACAAGATGTTTAGC TTTTATCCGTCTCTGAAATTGATCTATCAATGGGAAAAGGGCTCAAAATCCTCAGCTTAAAGCATAAATCCAGGCCAACTCCAGCAAAAA GGAAGATCAAAAGATTCTCCGAGACATAGACTGCGCCATCAAGAGCATGGGACCAGAAGCTGGCTGCATCCAACTCCAATGGTGGTCCAC CTCCAAGTGTAGCAAGGCCTGCATTGAATGCA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U157430 | 2.1e-28 | 96 (16.9% of RFLP seq) | + |
SGN-U151511 | 419 (73.8% of RFLP seq) | + | |
SGN-U157430 | 3.9e-39 | 102 (17.8% of RFLP seq) | - |
SGN-U151511 | 419 (73.3% of RFLP seq) | - |
![]() |
| ![]() Tomato-EXPIMP 2009 |
| ![]() Tomato-EXPEN 2000 |
| ![]() Tomato-EXPEN 1992 |
Overgo hybridization and physical mapping |
TG346 was used as an overgo probe on plate 12 [well A6]
Plausible BAC Matches: P233D20, P247P03, P086B15, P237F09, P091E17, P229F06, P264N19, P208B20, P214N11, P117O08, P009L22, P017E11, P173I22, P307D01, P220K08, P171P18
Overgo Sequences
A sequence
GAGACAAGCCTGCATGCCTACAAC
|
B sequence
ACGTCCACATGAGTGTGTTGTAGG
|
AB sequence
GAGACAAGCCTGCATGCCTACAACACACTC
|
Marker sequence
CTCACTATAGGGAGACAAGCCTGCATGCCTACAACACACTCATGTGGACG
TCTCCCCATAGTTTTTTTGAAGACTATATCATGTAATATTGTTGGTTATT ATAAAGGAATTGTCTTTGGAAATACCCCAATCATAGCTATTCCAGATAAC TTGAATGACAGAAAGATACTCGAAGTGCAGCTTTATCCCTTCTGAAACTA GTCTCCTGTGACTGACCTGACAATATTTTACTGAATTTATGGATAATTGC AGTGAATGGCGCTTTTCAAGTATAATTCTATCTAAGCAATTGTTAGAGAG TGAATTTACTGGGTCTCTGTATATACACTCAGAAGTAATAAATAGGCAAC AAGATGTTTAGCTTTTATCCGTCTCTGAAATTGATCTATCAATGGGAAAA GGGCTCAAAATCCTCAGCTTAAAGCATAAATCCAGGCCAACTCCAGCAAA AAGGAAGATCAAAAGATTCTCCGAGACATAGACTGCGCCATCAAGAGCAT GGGACCAGAAGCTGGCTGCATCCAACTCCAATGGTGGTCCACCTCCAAGT GTAGCAAGGCCTGCATTG |
![]() |
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
![]() |
User comments |
Please wait, checking for comments. (If comments do not show up, access them here)