SGN Marker C2_At1g26550

SGN-M6712
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U201593---
Lycopersicon CombinedSingleSGN-U217831---
Solanum tuberosumMultipleSGN-U248197---
ArabidopsisSingleAt1g26550 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25117)
Chromosome
1
Position
9.17 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41063
Forward primer (5'-3')
TTTCCACGTGGCAAGATGGCAG
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TGCACTGGTAGCTCCAACAGGGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10104
Forward primer (5'-3')
TTTCCACGTGGCAAGATGGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCACTGGTAGCTCCAACAGGGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 80
 Approximate temperature
55°C
  
PCR data   Exp. ID 10105
Forward primer (5'-3')
TTTCCACGTGGCAAGATGGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCACTGGTAGCTCCAACAGGGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 80
 Approximate temperature
55°C
  
PCR data   Exp. ID 10106
Forward primer (5'-3')
TTTCCACGTGGCAAGATGGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCACTGGTAGCTCCAACAGGGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 80
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U217831
SGN-U273050
SGN-U273051
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g26550  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6712 marker 6712
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