SGN Marker C2_At1g29320

SGN-M6742
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309048 (SGN)
128031 (CGN)
---
Lycopersicon CombinedMultipleSGN-U218547---
Solanum tuberosumSingleSGN-U253696---
ArabidopsisSingleAt1g29320 on TAIR---
Mapped locations  
Map: Tobacco N. acuminata   
Map version
89 (location: 46436)
Chromosome
3
Position
19.10 cM
Confidence
F(LOD3)
Protocol
CAPS


Tobacco N. acuminata

Map: Eggplant-COSII   
Map version
63 (location: 42179)
Chromosome
8
Position
0.00 cM
Confidence
F(LOD3)
Protocol
CAPS


Eggplant-COSII

PCR data   Exp. ID 43743
Forward primer (5'-3')
ACTTTCTTATGCAAAGATGATCACCG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
GATAGGCTGGTCAACGTCATTTCA
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38154)
Chromosome
8
Position
0.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39437
Forward primer (5'-3')
ACTTTCTTATGCAAAGATGATCACCG
Accessions and product sizes
Solanum pennellii TA56
1650
Solanum lycopersicum TA209
1650
Approximate temperature
53°C
Reverse primer (5'-3')
TCTCTGAGCAGAAATATCATAAAGACG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25147)
Chromosome
1
Position
10.26 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10134
Forward primer (5'-3')
ACTTTCTTATGCAAAGATGATCACCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTCTGAGCAGAAATATCATAAAGACG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1200
Approximate temperature
55°C
  
PCR data   Exp. ID 10135
Forward primer (5'-3')
ACTTTCTTATGCAAAGATGATCACCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTCTGAGCAGAAATATCATAAAGACG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1200
Approximate temperature
55°C
  
PCR data   Exp. ID 10136
Forward primer (5'-3')
ACTTTCTTATGCAAAGATGATCACCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTCTGAGCAGAAATATCATAAAGACG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1200
Approximate temperature
55°C
  
PCR data   Exp. ID 32209
Forward primer (5'-3')
ACTTTCTTATGCAAAGATGATCACCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCTCTGAGCAGAAATATCATAAAGACG
Enzymes
All possible enzymes for pennellii and and lycopersicum: ApoI,AvaII,BstEII,BstNI,PflFI,PvuII,Sau96I,ScrFI,XmnI
All possible enzymes for lycopersicum and pimpinellifolium: BstNI,ScrFI
  
Accessions and product sizes
Solanum pennellii LA716: 1200
Solanum lycopersicum LA925: 1200
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At1g29320F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. hirtum 120062 plant #28, AB1 chromatogram - [View]
Forward amplicon sequence for S. hirtum 120062 plant #28, plain text
Forward amplicon sequence for S. quitoense plant #3, AB1 chromatogram - [View]
Forward amplicon sequence for S. quitoense plant #3, plain text

Genomic location of C2_At1g29320  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6742 marker 6742
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)