SGN Marker C2_At1g30360

SGN-M6755
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301268 (SGN)
120618 (CGN)
---
Lycopersicon CombinedMultipleSGN-U221790---
Solanum tuberosumSingleSGN-U249260---
ArabidopsisSingleAt1g30360 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46577)
Chromosome
12
Position
23.20 cM
Confidence
I(LOD2)
Protocol
PCR


Tobacco N. tomentosiformis

Map: Eggplant-COSII   
Map version
63 (location: 42181)
Chromosome
8
Position
38.20 cM
Confidence
F(LOD3)
Protocol
dCAPS


Eggplant-COSII

PCR data   Exp. ID 43745
Forward primer (5'-3')
TTGAACTGAGTTCGGCATGGATCAGC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AAGCCTCCTTTATCTCAGCTTCAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Pepper-COSII   
Map version
58 (location: 41321)
Chromosome
2
Position
49.00 cM
Confidence
F(LOD3)
Protocol
PCR


Pepper-COSII

PCR data   Exp. ID 43297
Forward primer (5'-3')
GCCTTCCACAGAATGCAACTTTCTTC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AAGCCTCCTTTATCTCAGCTTCAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38161)
Chromosome
8
Position
21.30 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39443
Forward primer (5'-3')
GCCTTCCACAGAATGCAACTTTCTTC
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
AAGCCTCCTTTATCTCAGCTTCAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25160)
Chromosome
1
Position
10.72 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g30360  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6755 marker 6755
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