SGN Marker C2_At1g49040

SGN-M6828
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309666 (SGN)
128978 (CGN)
---
Lycopersicon CombinedSingleSGN-U216668---
Solanum tuberosumSingleSGN-U251423---
ArabidopsisSingleAt1g49040 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25236)
Chromosome
1
Position
18.15 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41097
Forward primer (5'-3')
TGAACGTGTCCTTACTGCTGCCC
Accessions and product sizes
Solanum lycopersicum TA209
1000
Solanum pennellii TA56
1000
Approximate temperature
55°C
Reverse primer (5'-3')
TTGGTATGTCCCATAAGCTTGTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10232
Forward primer (5'-3')
TGAACGTGTCCTTACTGCTGCCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGGTATGTCCCATAAGCTTGTGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 10233
Forward primer (5'-3')
TGAACGTGTCCTTACTGCTGCCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGGTATGTCCCATAAGCTTGTGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 10234
Forward primer (5'-3')
TGAACGTGTCCTTACTGCTGCCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGGTATGTCCCATAAGCTTGTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1000
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g49040  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6828 marker 6828
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