Sol Genomics Network

SGN Marker C2_At1g60440

SGN-M6909
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U197812	-	-	-
Solanum tuberosum	Single	SGN-U252374	-	-	-
Arabidopsis	Single	At1g60440 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46596)
Chromosome 10
Position 53.40 cM
Confidence I(LOD2)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Eggplant-COSII
Map version 63 (location: 42190)
Chromosome 3
Position 56.40 cM
Confidence I(LOD2)
Protocol CAPS

Eggplant-COSII

PCR data Exp. ID 43754

Forward primer (5'-3')

TGCCCGGTCCCTCTTAAGGATG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TCCGCTTGAGCCCAAAACGAAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41336)
Chromosome 11
Position 57.80 cM
Confidence I
Protocol dCAPS

Pepper-COSII

PCR data Exp. ID 43312

Forward primer (5'-3')

AGGAGAAGAACGGATAGCTAATCCAG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TCCGCTTGAGCCCAAAACGAAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38217)
Chromosome 5
Position 0.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39490

Forward primer (5'-3')

TGCCCGGTCCCTCTTAAGGATG

Accessions and product sizes

Solanum lycopersicum TA209

150

Solanum pennellii TA56

150

Approximate temperature

55°C

Reverse primer (5'-3')

TCCGCTTGAGCCCAAAACGAAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25320)
Chromosome 1
Position 22.27 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10308
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 850	Approximate temperature 55°C

PCR data Exp. ID 10309
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 850	Approximate temperature 55°C

PCR data Exp. ID 10310
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 850	Approximate temperature 55°C

PCR data Exp. ID 12731
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 920	Approximate temperature 55°C

PCR data Exp. ID 12732
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 920	Approximate temperature 55°C

PCR data Exp. ID 12733
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 920	Approximate temperature 55°C

PCR data Exp. ID 12734
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1000	Approximate temperature 55°C

PCR data Exp. ID 12735
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1000	Approximate temperature 55°C

PCR data Exp. ID 12736
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 920	Approximate temperature 55°C

PCR data Exp. ID 12737
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 920	Approximate temperature 55°C

PCR data Exp. ID 12738
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 850	Approximate temperature 55°C

PCR data Exp. ID 12739
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Physalis TA1367: 920+850	Approximate temperature 55°C

PCR data Exp. ID 12740
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 850	Approximate temperature 55°C

PCR data Exp. ID 12741
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 750	Approximate temperature 55°C

PCR data Exp. ID 12742
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 750	Approximate temperature 55°C

PCR data Exp. ID 12743
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 850	Approximate temperature 55°C

PCR data Exp. ID 32809
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1000	Approximate temperature 55°C

PCR data Exp. ID 32810
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1000	Approximate temperature 55°C

PCR data Exp. ID 32811
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 920	Approximate temperature 55°C

PCR data Exp. ID 32812
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 920	Approximate temperature 55°C

PCR data Exp. ID 10311
Forward primer (5'-3') TGCCCGGTCCCTCTTAAGGATG	Digested band sizes (using HinfI) Solanum pennellii LA716: 850 Solanum lycopersicum LA925: 450+400	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCGCTTGAGCCCAAAACGAAG	Enzymes All possible enzymes for pennellii and and lycopersicum: MspI, EcoRV, HaeIII, HinfI, DpnII
Accessions and product sizes Solanum pennellii LA716: 850 Solanum lycopersicum LA925: 850	Approximate temperature 55°C