SGN Marker C2_At2g20890

SGN-M7258
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U203896---
Lycopersicon CombinedSingleSGN-U214912---
Solanum tuberosumSingleSGN-U247631---
ArabidopsisSingleAt2g20890 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25673)
Chromosome
2
Position
9.00 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41223
Forward primer (5'-3')
TGGCGGCTGTTACTTCAGTATCTTTC
Accessions and product sizes
Solanum lycopersicum TA209
400
Solanum pennellii TA56
400
Approximate temperature
55°C
Reverse primer (5'-3')
AACACAGGATCATATTGGTAGGATTTC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
190+200
Solanum pennellii TA56
350
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10615
Forward primer (5'-3')
TGGCGGCTGTTACTTCAGTATCTTTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AACACAGGATCATATTGGTAGGATTTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1100
 Approximate temperature
55°C
  
PCR data   Exp. ID 10616
Forward primer (5'-3')
TGGCGGCTGTTACTTCAGTATCTTTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AACACAGGATCATATTGGTAGGATTTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1100
 Approximate temperature
55°C
  
PCR data   Exp. ID 10617
Forward primer (5'-3')
TGGCGGCTGTTACTTCAGTATCTTTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AACACAGGATCATATTGGTAGGATTTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1100
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U214912
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At2g20890F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At2g20890F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g20890  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7258 marker 7258
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