SGN Marker C2_At2g30520

SGN-M7356
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle299771 (SGN)
122409 (CGN)		---
Lycopersicon CombinedSingleSGN-U218760---
Solanum tuberosumMultipleSGN-U248158---
ArabidopsisSingleAt2g30520 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38349)
Chromosome
7
Position
31.00 cM
Confidence
CF(LOD3)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 41254
Forward primer (5'-3')
TCCAACTGATGTTATTGTTGAAGTAGG
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
TAAGTTTCCTTATGTAATTGCTCTTTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25773)
Chromosome
2
Position
13.01 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10729
Forward primer (5'-3')
ATGGAAAGAACTGGCCAATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAAGTTTGCTTCACCTACTTCAAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 10730
Forward primer (5'-3')
ATGGAAAGAACTGGCCAATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAAGTTTGCTTCACCTACTTCAAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 10731
Forward primer (5'-3')
ATGGAAAGAACTGGCCAATGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAAGTTTGCTTCACCTACTTCAAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U218760
SGN-U275573
SGN-U289230
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g30520  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7356 marker 7356
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