Sol Genomics Network

SGN-M7361
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U198110	-	-	-
Lycopersicon Combined	Single	SGN-U215965	-	-	-
Solanum tuberosum	Single	SGN-U245136	-	-	-
Arabidopsis	Single	At2g30970 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41256

Forward primer (5'-3')

TTACAGGGATGACAATGGAAAACC

Accessions and product sizes

Solanum pennellii TA56

480

Solanum lycopersicum TA209

480

Approximate temperature

53°C

Reverse primer (5'-3')

ATCAGGACAAAAGCGCTTTTGG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10732
Forward primer (5'-3') TTACAGGGATGACAATGGAAAACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAGGACAAAAGCGCTTTTGG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1400	Approximate temperature 55°C

PCR data Exp. ID 10733
Forward primer (5'-3') TTACAGGGATGACAATGGAAAACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAGGACAAAAGCGCTTTTGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1400	Approximate temperature 55°C

PCR data Exp. ID 10734
Forward primer (5'-3') TTACAGGGATGACAATGGAAAACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAGGACAAAAGCGCTTTTGG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1400	Approximate temperature 55°C