SGN Marker C2_At2g32415

SGN-M7373
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307608 (SGN)
129061 (CGN)
---
Lycopersicon CombinedSingleSGN-U236612---
Solanum tuberosumSingleSGN-U266643---
ArabidopsisSingleAt2g32415 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25790)
Chromosome
2
Position
13.77 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41264
Forward primer (5'-3')
TCCTGGTATAATGCTTCTTTTTGAACC
Accessions and product sizes
Solanum pennellii TA56
1500
Solanum lycopersicum TA209
1500
Approximate temperature
55°C
Reverse primer (5'-3')
AACAAAGCTCTTTCGAGATCTTCATC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1400
Solanum lycopersicum TA209
1500
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10750
Forward primer (5'-3')
TCCTGGTATAATGCTTCTTTTTGAACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACAAAGCTCTTTCGAGATCTTCATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 3000
Approximate temperature
55°C
  
PCR data   Exp. ID 10751
Forward primer (5'-3')
TCCTGGTATAATGCTTCTTTTTGAACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACAAAGCTCTTTCGAGATCTTCATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 3000
Approximate temperature
55°C
  
PCR data   Exp. ID 10752
Forward primer (5'-3')
TCCTGGTATAATGCTTCTTTTTGAACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AACAAAGCTCTTTCGAGATCTTCATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 3000
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At2g32415F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At2g32415  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7373 marker 7373
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