SGN Marker C2_At2g40490

SGN-M7473
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310269 (SGN)
130168 (CGN)
---
Lycopersicon CombinedMultipleSGN-U215034---
Solanum tuberosumSingleSGN-U245725---
ArabidopsisSingleAt2g40490 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25895)
Chromosome
2
Position
16.92 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41296
Forward primer (5'-3')
AGGGGAAGGGTCCTGTCATATTTG
Accessions and product sizes
Solanum lycopersicum TA209
1200
Solanum pennellii TA56
1200
Approximate temperature
55°C
Reverse primer (5'-3')
TTCTTAGAGGAACCACCTTCAACCAC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
850
Solanum pennellii TA56
150+350+500
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32302
Forward primer (5'-3')
AGGGGAAGGGTCCTGTCATATTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTTAGAGGAACCACCTTCAACCAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1400
Approximate temperature
55°C
  
PCR data   Exp. ID 32303
Forward primer (5'-3')
AGGGGAAGGGTCCTGTCATATTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTTAGAGGAACCACCTTCAACCAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1000
Approximate temperature
55°C
  
PCR data   Exp. ID 32304
Forward primer (5'-3')
AGGGGAAGGGTCCTGTCATATTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCTTAGAGGAACCACCTTCAACCAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1000
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g40490  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7473 marker 7473
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