SGN Marker C2_At2g45640

SGN-M7532
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303033 (SGN)
119593 (CGN)		---
Capsicum annuumSingleSGN-U198445---
Lycopersicon CombinedSingleSGN-U217422---
Solanum tuberosumSingleSGN-U248145---
ArabidopsisSingleAt2g45640 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25956)
Chromosome
2
Position
18.81 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41311
Forward primer (5'-3')
TCCTCTGTTGCTTCGTGTTTTCAC
Accessions and product sizes
Solanum lycopersicum TA209
800
Approximate temperature
Unknown
Reverse primer (5'-3')
TTTGGACCTCATCTTTGGGTTCC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10873
Forward primer (5'-3')
TCCTCTGTTGCTTCGTGTTTTCAC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TTTGGACCTCATCTTTGGGTTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 800
 Approximate temperature
Unknown
  
PCR data   Exp. ID 10874
Forward primer (5'-3')
TCCTCTGTTGCTTCGTGTTTTCAC
 
 
Mg+2 concentration
Unknown
Reverse primer (5'-3')
TTTGGACCTCATCTTTGGGTTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 800
 Approximate temperature
Unknown
  
Unigene blast matches for primers 
SGN-U198445
SGN-U217422
SGN-U271687
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g45640  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7532 marker 7532
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