SGN Marker C2_At3g16170

SGN-M7755
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302705 (SGN)
122035 (CGN)		---
Capsicum annuumMultipleSGN-U199374---
Lycopersicon CombinedSingleSGN-U216225---
Solanum tuberosumSingleSGN-U246220---
ArabidopsisSingleAt3g16170 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26185)
Chromosome
3
Position
5.48 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41391
Forward primer (5'-3')
AAGCCATTTCCAGGTGTGCAG
Accessions and product sizes
Solanum lycopersicum TA209
250
Solanum pennellii TA56
250
Approximate temperature
55°C
Reverse primer (5'-3')
TCGCATCGTCCAAAAGAATCTTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11066
Forward primer (5'-3')
AAGCCATTTCCAGGTGTGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGCATCGTCCAAAAGAATCTTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 11067
Forward primer (5'-3')
AAGCCATTTCCAGGTGTGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGCATCGTCCAAAAGAATCTTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
 Approximate temperature
55°C
  
PCR data   Exp. ID 11068
Forward primer (5'-3')
AAGCCATTTCCAGGTGTGCAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCGCATCGTCCAAAAGAATCTTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U216225
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Genomic location of C2_At3g16170  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7755 marker 7755
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