SGN Marker C2_At3g16300

SGN-M7758
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300560 (SGN)
124103 (CGN)
---
Lycopersicon CombinedSingleSGN-U240367---
Solanum tuberosumMultipleSGN-U248264---
ArabidopsisSingleAt3g16300 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26188)
Chromosome
3
Position
5.53 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41393
Forward primer (5'-3')
TCGGAATTCAGCTGCCGGAG
Accessions and product sizes
Solanum pennellii TA56
250
Solanum lycopersicum TA209
250
Approximate temperature
55°C
Reverse primer (5'-3')
ACAAAAATGATGCAGGGGTTTGC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
200
Solanum pennellii TA56
250
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g16300  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7758 marker 7758
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