Sol Genomics Network

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SGN-M7788
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301392 (SGN) 123408 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U197834	-	-	-
Lycopersicon Combined	Multiple	SGN-U217814	-	-	-
Solanum tuberosum	Single	SGN-U253556	-	-	-
Arabidopsis	Single	At3g18430 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41407

Forward primer (5'-3')

TGCCAGAATTCGCAATGAATCCAC

Accessions and product sizes

Solanum lycopersicum TA209

1000

Solanum pennellii TA56

1000

Approximate temperature

55°C

Reverse primer (5'-3')

TTCAAGCCATCCACCATCTTAAGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 11095
Forward primer (5'-3') TGCCAGAATTCGCAATGAATCCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCAAGCCATCCACCATCTTAAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 250	Approximate temperature 55°C

PCR data Exp. ID 11096
Forward primer (5'-3') TGCCAGAATTCGCAATGAATCCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCAAGCCATCCACCATCTTAAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 250	Approximate temperature 55°C

PCR data Exp. ID 11097
Forward primer (5'-3') TGCCAGAATTCGCAATGAATCCAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCAAGCCATCCACCATCTTAAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 250	Approximate temperature 55°C