Synonyms

None

Locus associations

None

Orthologs in this COSII group

Mapped locations Mapped locations

Map: Arabidopsis COSII    Map version 44 (location: 26218) Chromosome 3 Position 6.33 MB Confidence uncalculated Protocol CAPS

Arabidopsis COSII

PCR data   Exp. ID 41407 Forward primer (5'-3') TGCCAGAATTCGCAATGAATCCAC Accessions and product sizes Solanum lycopersicum TA209 1000 Solanum pennellii TA56 1000 Approximate temperature 55°C Reverse primer (5'-3') TTCAAGCCATCCACCATCTTAAGC Digested band sizes (using unknown enzyme) Mg+2 concentration 1.5mM     Enzymes

Other PCR data

Unigene blast matches for primers

Universal primers for Asterid species

Other COSII sequence data

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BLASTX result of original unigene sequences against Arabidopsis protein database

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Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

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Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

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Amplicon sequence alignment, FASTA
At3g18430F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

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Genomic location of C2_At3g18430 Genomic location of C2_At3g18430

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7788 marker 7788