SGN Marker C2_At3g21630

SGN-M7836
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309996 (SGN)
131511 (CGN)
---
Lycopersicon CombinedMultipleSGN-U215435---
Solanum tuberosumSingleSGN-U248222---
ArabidopsisSingleAt3g21630 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26267)
Chromosome
3
Position
7.62 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41427
Forward primer (5'-3')
ATCTCTTAATAAGGGTGCTTCTCCAG
Accessions and product sizes
Solanum lycopersicum TA209
1100
Solanum pennellii TA56
1100
Approximate temperature
55°C
Reverse primer (5'-3')
TGGTAGCCTCCATGTCCATTTTCTTG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1100
Solanum lycopersicum TA209
650
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11123
Forward primer (5'-3')
ATCTCTTAATAAGGGTGCTTCTCCAG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TGGTAGCCTCCATGTCCATTTTCTTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 2600
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g21630  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7836 marker 7836
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