Sol Genomics Network

SGN Marker C2_At3g63190

SGN-M8127
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303040 (SGN) 125345 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U201290	-	-	-
Lycopersicon Combined	Single	SGN-U218281	-	-	-
Solanum tuberosum	Single	SGN-U248642	-	-	-
Arabidopsis	Single	At3g63190 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49262)
Chromosome 9
Position 58.94 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47198)
Chromosome 9
Position 53.95 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Eggplant-COSII
Map version 63 (location: 42233)
Chromosome 9
Position 50.90 cM
Confidence I(LOD2)
Protocol CAPS

Eggplant-COSII

PCR data Exp. ID 43799

Forward primer (5'-3')

TTGGTGCAGCCGTATGACAAATCC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TCCATCATTATTTGGCGTCATACC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38596)
Chromosome 9
Position 52.00 cM
Confidence CF(LOD3)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39788

Forward primer (5'-3')

TTGGTGCAGCCGTATGACAAATCC

Accessions and product sizes

Solanum pennellii TA56

500

Solanum lycopersicum TA209

450

Approximate temperature

50°C

Reverse primer (5'-3')

TCCATCATTATTTGGCGTCATACC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

500

Solanum lycopersicum TA209

450

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 26564)
Chromosome 3
Position 23.35 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11306
Forward primer (5'-3') TTGGTGCAGCCGTATGACAAATCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATCATTATTTGGCGTCATACC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 500	Approximate temperature 50°C

PCR data Exp. ID 11307
Forward primer (5'-3') TTGGTGCAGCCGTATGACAAATCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATCATTATTTGGCGTCATACC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 450	Approximate temperature 50°C

PCR data Exp. ID 11308
Forward primer (5'-3') TTGGTGCAGCCGTATGACAAATCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATCATTATTTGGCGTCATACC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 500	Approximate temperature 50°C

PCR data Exp. ID 32639
Forward primer (5'-3') TTGGTGCAGCCGTATGACAAATCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATCATTATTTGGCGTCATACC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 500	Approximate temperature 55°C

PCR data Exp. ID 33074
Forward primer (5'-3') TTGGTGCAGCCGTATGACAAATCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATCATTATTTGGCGTCATACC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 500	Approximate temperature 55°C

PCR data Exp. ID 33075
Forward primer (5'-3') TTGGTGCAGCCGTATGACAAATCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATCATTATTTGGCGTCATACC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 500	Approximate temperature 55°C

PCR data Exp. ID 11309
Forward primer (5'-3') TTGGTGCAGCCGTATGACAAATCC	Digested band sizes (using amplicon difference) Solanum pennellii LA716: 500 Solanum lycopersicum LA925: 450	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCATCATTATTTGGCGTCATACC	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference All possible enzymes for lycopersicum and pimpinellifolium: amplicon difference
Accessions and product sizes Solanum pennellii LA716: 500 Solanum lycopersicum LA925: 450	Approximate temperature 50°C