SGN Marker C2_At4g33210

SGN-M8449
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle310260 (SGN)
129012 (CGN)
---
Lycopersicon CombinedSingleSGN-U218955---
Solanum tuberosumSingleSGN-U252109---
ArabidopsisSingleAt4g33210 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26892)
Chromosome
4
Position
16.02 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41620
Forward primer (5'-3')
TTGCCGTGCTTTAATTTCTCTTG
Accessions and product sizes
Solanum pennellii TA56
1850
Solanum lycopersicum TA209
1850
Approximate temperature
55°C
Reverse primer (5'-3')
ACAGGGGGCAATTAATAGATGCTTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
840+1000
Solanum lycopersicum TA209
650+1000
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11545
Forward primer (5'-3')
TTGCCGTGCTTTAATTTCTCTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACAGGGGGCAATTAATAGATGCTTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11546
Forward primer (5'-3')
TTGCCGTGCTTTAATTTCTCTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACAGGGGGCAATTAATAGATGCTTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 400
Approximate temperature
55°C
  
PCR data   Exp. ID 11547
Forward primer (5'-3')
TTGCCGTGCTTTAATTTCTCTTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACAGGGGGCAATTAATAGATGCTTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 400
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At4g33210F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At4g33210  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8449 marker 8449
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