Sol Genomics Network

SGN Marker C2_At5g06130

SGN-M8595
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	302226 (SGN) 121649 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U201082	-	-	-
Arabidopsis	Single	At5g06130 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41507)
Chromosome 9
Position 0.00 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43483

Forward primer (5'-3')

AGTGCAAATATTGCTATGGAAGTG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TGAACATCGTGCACATGCCAAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38750)
Chromosome 9
Position 37.60 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39907

Forward primer (5'-3')

AGTGCAAATATTGCTATGGAAGTG

Accessions and product sizes

Solanum pennellii TA56

100

Solanum lycopersicum TA209

100

Approximate temperature

55°C

Reverse primer (5'-3')

TGAACATCGTGCACATGCCAAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 27046)
Chromosome 5
Position 1.85 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 11638
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 250	Approximate temperature 55°C

PCR data Exp. ID 11639
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 250	Approximate temperature 55°C

PCR data Exp. ID 11640
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 250	Approximate temperature 55°C

PCR data Exp. ID 13637
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 250	Approximate temperature 55°C

PCR data Exp. ID 13638
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 220	Approximate temperature 55°C

PCR data Exp. ID 13639
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 13640
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 400	Approximate temperature 55°C

PCR data Exp. ID 13641
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 400	Approximate temperature 55°C

PCR data Exp. ID 13642
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 350	Approximate temperature 55°C

PCR data Exp. ID 13643
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Physalis TA1367: 220	Approximate temperature 55°C

PCR data Exp. ID 13644
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 310	Approximate temperature 55°C

PCR data Exp. ID 13645
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 310	Approximate temperature 55°C

PCR data Exp. ID 13646
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 310	Approximate temperature 55°C

PCR data Exp. ID 32648
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 220	Approximate temperature 55°C

PCR data Exp. ID 33171
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 220	Approximate temperature 55°C

PCR data Exp. ID 33172
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 220	Approximate temperature 55°C

PCR data Exp. ID 33173
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 300	Approximate temperature 55°C

PCR data Exp. ID 33174
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 400	Approximate temperature 55°C

PCR data Exp. ID 33175
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 400	Approximate temperature 55°C

PCR data Exp. ID 11641
Forward primer (5'-3') AGTGCAAATATTGCTATGGAAGTG	Digested band sizes (using AluI) Solanum pennellii LA716: 250 Solanum lycopersicum LA925: 200	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGAACATCGTGCACATGCCAAG	Enzymes All possible enzymes for pennellii and and lycopersicum: AluI, DraI, KpnI
Accessions and product sizes Solanum lycopersicum LA925: 250 Solanum pennellii LA716: 250	Approximate temperature 55°C

Unigene blast matches for primers

SGN-U217283

Universal primers for Asterid species

No additional PCR data found.

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At5g06130

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8595 marker 8595

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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