SGN Marker C2_At5g19840

SGN-M8768
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300786 (SGN)
121599 (CGN)
---
Capsicum annuumSingleSGN-U203625---
Lycopersicon CombinedSingleSGN-U228801---
Solanum tuberosumSingleSGN-U262964---
ArabidopsisSingleAt5g19840 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 27228)
Chromosome
5
Position
6.71 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41736
Forward primer (5'-3')
AGTCTTTTATGGTGATATTAGAAGCC
Accessions and product sizes
Solanum pennellii TA56
150
Solanum lycopersicum TA209
150
Approximate temperature
55°C
Reverse primer (5'-3')
TGATAAAGGTAGAAAAGCTCAATGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 11761
Forward primer (5'-3')
AGTCTTTTATGGTGATATTAGAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATAAAGGTAGAAAAGCTCAATGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 11762
Forward primer (5'-3')
AGTCTTTTATGGTGATATTAGAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATAAAGGTAGAAAAGCTCAATGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
Approximate temperature
55°C
  
PCR data   Exp. ID 11763
Forward primer (5'-3')
AGTCTTTTATGGTGATATTAGAAGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGATAAAGGTAGAAAAGCTCAATGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format

Genomic location of C2_At5g19840  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D8768 marker 8768
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