This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.
Tomato locus polygalacturonase
Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
[loading edit links...]
|
[loading...]
|
|
![]() ![]() |
Registry name: | None | [Associate registry name] |
![]() ![]() | [Add notes, figures or images] |
Success
The display image was set successfully.
Image | Description | Type |
---|
![]() ![]() | [Associate accession] |
Accession name:
Would you Like to specify an allele?
Alleles (0) | None | [Add new Allele] |
![]() ![]() | [Associate new locus] |
[loading...]
|
Associated loci - graphical view | None |
![]() ![]() |
[loading...]
![]() ![]() |
![]() ![]() |
![]() ![]() | unprocessed genomic sequence region underlying this gene |
>Solyc10g080210.1 SL2.50ch10:61565803..61559168 (sequence from reverse strand)
ATGGTTATCCAAAGGAATAGTATTCTCCTTCTCATTATTATTTTTGCTTCATCAATTTCAACTTGTAGAAGCAATGTTATTGATGACAATTTATTCAAACAAGTTTATGATAATATTCTTGAACAAGAATTTGCTCATGATTTTCAAGCTTATCTTTCTTATTTGAGCAAAAATATTGAAAGCAACAATAATATTGACAAGGTTGATAAAAATGGGATTAAAGTGATTAATGTACTTAGCTTTGGAGCTAAGGGTGATGGAAAAACATATGATAATATTGTAAGTATTTAAATATTGGAATATATTTGTGGGGATGAAAATGATAGAGAATATAAGAATTATTTGGAAGGATGAAAAGTTATATTTTATAAAGTAGAAAATTATTTTCTCGTTTTTAGTAATTAAAGGTGAAAAATGAGTTTTCTCGTAAGCGAGGAAAGTCATTTTCCATGGAACTGTATTTTTTTTTACTTTTAATAACGTCATAGTATTTGCTATACTCAAGAATAAGACACTATTATTGATGTTTAGTGCTCGAAAAGAAATTGATAGTAATTTTGCTAATATAACTATCAATTTCTTATATGTATATTTTTCAACCAAAATAACAAAGCGTAATCCAATAAGTGGGCCTCTAGAATAAAGAGTAAGTTCTATTAATTCTTAACCTTATTTAATTTTATGGAAACCTCGACAAAACGACAATGCTCAACTTATATTCGAATTCGAGACCAACCATATGAACAACCTCACACATGCATATAGTCCTAATATATATAATTTTTCTAAAAAATATCTTCAATCTACCATATTGAAATATTGAAAAATGACTTTTATCCTATCGAACACATAATCAAGAGTTTCTTTTAAGAATTTACCACTACATTTGGTAGTGTTTCTTATCGTGTTAAAATTATCTTTCAGGCATTTGAGCAAGCATGGAATGAAGCATGTTCATCTAGAACACCTGTTCAATTTGTGGTTCCTAAAAACAAGAATTATCTTCTCAAGCAAATCACCTTTTCAGGTCCATGCAGATCTTCTATTTCAGTAAAGGTTAGCATATTGATTATTTATATCCTCTTTGTTAGCAATATATTATCTGGTTTATGACAAAATTTAAGAAAGTAATCAAAGATAGCTAAACAATGAATTTTCGTCACTAATTTAGCGGATTAGTGAGGAATTATCAAAATGTTATGTTAGCTATGAGCAACTTAGCTATGAATTAGCTAGTGAAGAAGTTTGATGCTAATTCTATTTTTTTTTGTAGAGTAAAGATATTTGAAACACATGTATTAATTATTAATTATGTCTTAATTAATATGTCAAGTGGATAGTTCAAACTAAAGAACTGTCAAAAGAAAATAAGAAAGAAATATTTATTTTTAAAATAAATTAAAAAGAAAAATATGAGAAATAAATTCAAAGCGAGAAGGTATTACATAATCATAGGGGATAAAAAGGATATTATATAGTAAAGAAAAACAACAACTACAACATATCTAATAAAGTCTCATAAATGGATATAAAAAAAGTATTGTGTAAGCAAACATTATCCCTACAAAAACTTTTGTGGGGTAGATCGATCCAGAGGTTGTTTCCAGACTCTTGGCTTAAAAAAAATGTTTTTTTTCTAAATAAGTTTGAAAGAAATGTTATATGATGAAAATATGAAAGAAAAAACATATCAATATTAAAAAATAATAAAAGTAATCAAAGTAAACGAAATAACAATAGGAATAATACTCATAAATGAAAATTTAGTGGCTTTCGTACTACATAATCTTAGTTTATTCATTGTTTCTTTAATTTCCCTTCTTATTTTTTTTGAAATTACTATGCAGATTTTTGGATCCTTAGAAGCATCTAGTAAAATTTCAGACTACAAAGATAGAAGGCTTTGGATTGCTTTTGATAGTGTTCAAAATTTAGTTGTTGGAGGAGGAGGAACTATCAATGGCAATGGACAAGTATGGTGGCCAAGTTCTTGCAAAATAAATAAATCACTGGTAATTTTATAACCTTGCTTATAAGTTTTACGCTATGTTGCTCGAATTCTTTAAACTTGTTCTAAAGATATTATATATTTGAAGGAGGTGTCACAAATGCATCACATTTTTAGAGATTCCGACCAATATTAGTTTTATGTAATCTAATTTTCAGAGCATCTTTGCCTTGTACTGATCATTGTTACCCTTTTTTTCTTCATGCAGCCATGCAGGGATGCACCAACGGTACGTTAATTCATTTGATTTGATAAAAAAAAAAGCCTAAAATATATTTGAATTTTAATTGAAATTGTTATAATAATTCTTAACTTTGGGCAGGACCTATTACCCCTTTGCACTATTTAATAGTGTATTTTAAAGATATAAAAGTGTTTAGTTGAAACAAAAATTTAGATATTCAAAAACTATATGAAAATTACTATAAATTGCAATTTTTTTGCATATCAATATGATTAAAAAATATTAGTTAAAGTTCTTATGATTTGATTCTAAAAATAAAAATCATGACAAACAATAGTAGACGGAGAAAGTATATAACAATACCTCTTCAAGTAGAATCGATTTGTACACACACCTCAAAACCTACGTTTCTTCGATTATATTTTCCTATTTCTTTTAATAGTTTTAATCAAAGCTATTAGTTCTGTCAAATCTATACATTGAAACTCTATCTTTGACGCCTCTGACATTCGAGATCGTTGATTTACAATGGATGAATGATTATTTAACTTTCTATTTAAATATTAAAACTAATATTGTTTAATTTTCAGGCCTTAACCTTCTGGAATTGCAAAAATTTGAAAGTGAATAATCTAAAGAGTAAAAATGCACAACAAATTCATATCAAATTTGAGTCATGCACTAATGTTGTAGCTTCAAATTTGATGATCAATGCTTCAGCAAAGAGCCCAAATACTGATGGAGTCCATGTATCAAATACTCAATATATTCAAATATCTGATACTATTATTGGAACAGGTTTATTTATTTAATTTTTATTTATCCAATTTAATTAGAAAAAAAAAGGAGTATTTTTATTTGATAACTAAATTATTAATTTTAATTTTTTTTATAGGTGATGATTGTATTTCAATTGTTTCTGGATCTCAAAATGTGCAGGCCACAAATATTACTTGTGGTCCAGGTCATGGTATAAGGTACTCTATTTTACAAATATACTTGTTTCCATTTTCTCTATTTCATAAAAGGTAGTATGATATAATAATTACTTTAAATCCTTTAATTAATTTATTGGCAAATTTTTTCTCTTGTCTTTATGGTTAATGACTTAGCACAATAATTAGGGCCCGTTTGGATGGGCGTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGTTGAAACTTATTTTTAAAATAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAGGCTCTTAAAATGTCTGCTTAGATGTGCTATATATATTTGAGCTTTTTTTGAAGTAGTATATTATCCTTAAGTTCAACATAAAAATACATGCTTTAACATAGCACATATAGTTAATCAAAAGACGAAATGATGAATAATTTTGCGAATTTGATTATTCACAAGAAAAGGGATAGTTCAAAGTGTACATTTCAAGTAATTGAAGATATCATAAAGACTAAAATTAGAAGAACTAATAATTGAGGGATCAAAAATGTTATTACCTTATTAAAATACTATTCCATTTTCATATTAAATTAACTAATTAAGAGTGTTTTATAATCTAATAAAACATGCAATAATTATTGACGAAATGTGGTTTTGGTACCTATAATCTTTCTGAATATTTGCTCTTATTTTTTCTCTTTTTATTTTTCCATGGATTAGTATTGGAAGCTTAGGATCTGGAAATTCAGAAGCTTATGTGTCTAATGTTACTGTAAATGAAGCCAAAATTATCGGTGCCGAAAATGGAGTTAGGATCAAGACTTGGCAGGTACCCTCCCCCCCCCCCCCCACACGCACATTTTTTTAATTTTTTTTAAATTTATAATCGAATATCAATATTAAAATATGATTAAATTTGATTTCATGTTTGAAAATTTATATTTGGAATAAAAGTATGTATTTTACTAGCTTTCTATGTTATATAGAAAAAAATGTTCAGAACTTCAGATTATTGTACTCGTACTAAGTGTAAATGTGTTGCTTTGTTTAGAAGTTTGGTTTATCCAGTTTTGGGTCATGATTAAACCAAACTTATAATGAAAAGGGGCTGCAACGGCCGGTCCCACTAGTGCTAGTATCAATAGGAAGATCTCACGTCTGTTTATTCAGATGGACGTTCTTGGTTGAATGTTAATAATTATAAATTTAATTAACATGTAATTAAGCATTATATAAATTAATATAATGTGGTTTAATAATGTAGGGAGGATCTGGACAAGCTAGCAACATCAAATTTCTGAATGTGGAAATGCAAGACGTTAAGTATCCCATAATTATAGACCAAAACTATTGTGATCGAGTTGAACCATGTATACAACAGGTAATTTTTTATTAACGAACAATTTATTATATTTTATTACTTCTTAAATCACCTTACATCATTAAAACTTTGAGATTCTTTTCACTAGTTAGTAACTTTTTGAATAGATTTTTAGTAAATGATATTCATTATTCCTTTTATTTTTCTTCTAATTTATGGATCTTTTGGACTATGGTCTAAAAATCTTGTTAAAGTAAACTGAATATCATAAGAAAAAATGTTAGATTATAATCTAAATTTTTTATAAATTATTAGACGTTATCTAATATTTTGTATGTAAGATTGAGAAACATATACATAAAACATTAGATTCAAATTTAATAATATCTAAAATATTGATTCAAATCAATCATGACTACACAAACGAATACATGCAGATTCTCAAACATATAGATGAAGTCATTTCAAAACGAATCAAATATAGTAGAGTATATCCTTAAAAGAGAGCATTTGGGTAAATAAGTAAAAATCATTAAGTTATAAAAAAAATTCTAACTCGATCTCTCACGATTATTTAATCACTTTGTTTGTTCCAGTTTTCAGCAGTTCAAGTGAAAAATGTGGTGTATGAGAATATCAAGGGCACAAGTGCAACAAAGGTGGCCATAAAATTTGATTGCAGCACAAACTTTCCATGTGAAGGAATTATAATGGAGAATATAAATTTAGTAGGGGAAAGTGGAAAACCATCAGAGGCTACGTGCAAAAATGTCCATTTTAACAATGCTGAACATGTTACACCACACTGCACTTCACTAGAAATTTCAGAGGATGAAGCTCTTTTGTATAATTATTAA
ATGGTTATCCAAAGGAATAGTATTCTCCTTCTCATTATTATTTTTGCTTCATCAATTTCAACTTGTAGAAGCAATGTTATTGATGACAATTTATTCAAACAAGTTTATGATAATATTCTTGAACAAGAATTTGCTCATGATTTTCAAGCTTATCTTTCTTATTTGAGCAAAAATATTGAAAGCAACAATAATATTGACAAGGTTGATAAAAATGGGATTAAAGTGATTAATGTACTTAGCTTTGGAGCTAAGGGTGATGGAAAAACATATGATAATATTGTAAGTATTTAAATATTGGAATATATTTGTGGGGATGAAAATGATAGAGAATATAAGAATTATTTGGAAGGATGAAAAGTTATATTTTATAAAGTAGAAAATTATTTTCTCGTTTTTAGTAATTAAAGGTGAAAAATGAGTTTTCTCGTAAGCGAGGAAAGTCATTTTCCATGGAACTGTATTTTTTTTTACTTTTAATAACGTCATAGTATTTGCTATACTCAAGAATAAGACACTATTATTGATGTTTAGTGCTCGAAAAGAAATTGATAGTAATTTTGCTAATATAACTATCAATTTCTTATATGTATATTTTTCAACCAAAATAACAAAGCGTAATCCAATAAGTGGGCCTCTAGAATAAAGAGTAAGTTCTATTAATTCTTAACCTTATTTAATTTTATGGAAACCTCGACAAAACGACAATGCTCAACTTATATTCGAATTCGAGACCAACCATATGAACAACCTCACACATGCATATAGTCCTAATATATATAATTTTTCTAAAAAATATCTTCAATCTACCATATTGAAATATTGAAAAATGACTTTTATCCTATCGAACACATAATCAAGAGTTTCTTTTAAGAATTTACCACTACATTTGGTAGTGTTTCTTATCGTGTTAAAATTATCTTTCAGGCATTTGAGCAAGCATGGAATGAAGCATGTTCATCTAGAACACCTGTTCAATTTGTGGTTCCTAAAAACAAGAATTATCTTCTCAAGCAAATCACCTTTTCAGGTCCATGCAGATCTTCTATTTCAGTAAAGGTTAGCATATTGATTATTTATATCCTCTTTGTTAGCAATATATTATCTGGTTTATGACAAAATTTAAGAAAGTAATCAAAGATAGCTAAACAATGAATTTTCGTCACTAATTTAGCGGATTAGTGAGGAATTATCAAAATGTTATGTTAGCTATGAGCAACTTAGCTATGAATTAGCTAGTGAAGAAGTTTGATGCTAATTCTATTTTTTTTTGTAGAGTAAAGATATTTGAAACACATGTATTAATTATTAATTATGTCTTAATTAATATGTCAAGTGGATAGTTCAAACTAAAGAACTGTCAAAAGAAAATAAGAAAGAAATATTTATTTTTAAAATAAATTAAAAAGAAAAATATGAGAAATAAATTCAAAGCGAGAAGGTATTACATAATCATAGGGGATAAAAAGGATATTATATAGTAAAGAAAAACAACAACTACAACATATCTAATAAAGTCTCATAAATGGATATAAAAAAAGTATTGTGTAAGCAAACATTATCCCTACAAAAACTTTTGTGGGGTAGATCGATCCAGAGGTTGTTTCCAGACTCTTGGCTTAAAAAAAATGTTTTTTTTCTAAATAAGTTTGAAAGAAATGTTATATGATGAAAATATGAAAGAAAAAACATATCAATATTAAAAAATAATAAAAGTAATCAAAGTAAACGAAATAACAATAGGAATAATACTCATAAATGAAAATTTAGTGGCTTTCGTACTACATAATCTTAGTTTATTCATTGTTTCTTTAATTTCCCTTCTTATTTTTTTTGAAATTACTATGCAGATTTTTGGATCCTTAGAAGCATCTAGTAAAATTTCAGACTACAAAGATAGAAGGCTTTGGATTGCTTTTGATAGTGTTCAAAATTTAGTTGTTGGAGGAGGAGGAACTATCAATGGCAATGGACAAGTATGGTGGCCAAGTTCTTGCAAAATAAATAAATCACTGGTAATTTTATAACCTTGCTTATAAGTTTTACGCTATGTTGCTCGAATTCTTTAAACTTGTTCTAAAGATATTATATATTTGAAGGAGGTGTCACAAATGCATCACATTTTTAGAGATTCCGACCAATATTAGTTTTATGTAATCTAATTTTCAGAGCATCTTTGCCTTGTACTGATCATTGTTACCCTTTTTTTCTTCATGCAGCCATGCAGGGATGCACCAACGGTACGTTAATTCATTTGATTTGATAAAAAAAAAAGCCTAAAATATATTTGAATTTTAATTGAAATTGTTATAATAATTCTTAACTTTGGGCAGGACCTATTACCCCTTTGCACTATTTAATAGTGTATTTTAAAGATATAAAAGTGTTTAGTTGAAACAAAAATTTAGATATTCAAAAACTATATGAAAATTACTATAAATTGCAATTTTTTTGCATATCAATATGATTAAAAAATATTAGTTAAAGTTCTTATGATTTGATTCTAAAAATAAAAATCATGACAAACAATAGTAGACGGAGAAAGTATATAACAATACCTCTTCAAGTAGAATCGATTTGTACACACACCTCAAAACCTACGTTTCTTCGATTATATTTTCCTATTTCTTTTAATAGTTTTAATCAAAGCTATTAGTTCTGTCAAATCTATACATTGAAACTCTATCTTTGACGCCTCTGACATTCGAGATCGTTGATTTACAATGGATGAATGATTATTTAACTTTCTATTTAAATATTAAAACTAATATTGTTTAATTTTCAGGCCTTAACCTTCTGGAATTGCAAAAATTTGAAAGTGAATAATCTAAAGAGTAAAAATGCACAACAAATTCATATCAAATTTGAGTCATGCACTAATGTTGTAGCTTCAAATTTGATGATCAATGCTTCAGCAAAGAGCCCAAATACTGATGGAGTCCATGTATCAAATACTCAATATATTCAAATATCTGATACTATTATTGGAACAGGTTTATTTATTTAATTTTTATTTATCCAATTTAATTAGAAAAAAAAAGGAGTATTTTTATTTGATAACTAAATTATTAATTTTAATTTTTTTTATAGGTGATGATTGTATTTCAATTGTTTCTGGATCTCAAAATGTGCAGGCCACAAATATTACTTGTGGTCCAGGTCATGGTATAAGGTACTCTATTTTACAAATATACTTGTTTCCATTTTCTCTATTTCATAAAAGGTAGTATGATATAATAATTACTTTAAATCCTTTAATTAATTTATTGGCAAATTTTTTCTCTTGTCTTTATGGTTAATGACTTAGCACAATAATTAGGGCCCGTTTGGATGGGCGTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGTTGAAACTTATTTTTAAAATAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAGGCTCTTAAAATGTCTGCTTAGATGTGCTATATATATTTGAGCTTTTTTTGAAGTAGTATATTATCCTTAAGTTCAACATAAAAATACATGCTTTAACATAGCACATATAGTTAATCAAAAGACGAAATGATGAATAATTTTGCGAATTTGATTATTCACAAGAAAAGGGATAGTTCAAAGTGTACATTTCAAGTAATTGAAGATATCATAAAGACTAAAATTAGAAGAACTAATAATTGAGGGATCAAAAATGTTATTACCTTATTAAAATACTATTCCATTTTCATATTAAATTAACTAATTAAGAGTGTTTTATAATCTAATAAAACATGCAATAATTATTGACGAAATGTGGTTTTGGTACCTATAATCTTTCTGAATATTTGCTCTTATTTTTTCTCTTTTTATTTTTCCATGGATTAGTATTGGAAGCTTAGGATCTGGAAATTCAGAAGCTTATGTGTCTAATGTTACTGTAAATGAAGCCAAAATTATCGGTGCCGAAAATGGAGTTAGGATCAAGACTTGGCAGGTACCCTCCCCCCCCCCCCCCACACGCACATTTTTTTAATTTTTTTTAAATTTATAATCGAATATCAATATTAAAATATGATTAAATTTGATTTCATGTTTGAAAATTTATATTTGGAATAAAAGTATGTATTTTACTAGCTTTCTATGTTATATAGAAAAAAATGTTCAGAACTTCAGATTATTGTACTCGTACTAAGTGTAAATGTGTTGCTTTGTTTAGAAGTTTGGTTTATCCAGTTTTGGGTCATGATTAAACCAAACTTATAATGAAAAGGGGCTGCAACGGCCGGTCCCACTAGTGCTAGTATCAATAGGAAGATCTCACGTCTGTTTATTCAGATGGACGTTCTTGGTTGAATGTTAATAATTATAAATTTAATTAACATGTAATTAAGCATTATATAAATTAATATAATGTGGTTTAATAATGTAGGGAGGATCTGGACAAGCTAGCAACATCAAATTTCTGAATGTGGAAATGCAAGACGTTAAGTATCCCATAATTATAGACCAAAACTATTGTGATCGAGTTGAACCATGTATACAACAGGTAATTTTTTATTAACGAACAATTTATTATATTTTATTACTTCTTAAATCACCTTACATCATTAAAACTTTGAGATTCTTTTCACTAGTTAGTAACTTTTTGAATAGATTTTTAGTAAATGATATTCATTATTCCTTTTATTTTTCTTCTAATTTATGGATCTTTTGGACTATGGTCTAAAAATCTTGTTAAAGTAAACTGAATATCATAAGAAAAAATGTTAGATTATAATCTAAATTTTTTATAAATTATTAGACGTTATCTAATATTTTGTATGTAAGATTGAGAAACATATACATAAAACATTAGATTCAAATTTAATAATATCTAAAATATTGATTCAAATCAATCATGACTACACAAACGAATACATGCAGATTCTCAAACATATAGATGAAGTCATTTCAAAACGAATCAAATATAGTAGAGTATATCCTTAAAAGAGAGCATTTGGGTAAATAAGTAAAAATCATTAAGTTATAAAAAAAATTCTAACTCGATCTCTCACGATTATTTAATCACTTTGTTTGTTCCAGTTTTCAGCAGTTCAAGTGAAAAATGTGGTGTATGAGAATATCAAGGGCACAAGTGCAACAAAGGTGGCCATAAAATTTGATTGCAGCACAAACTTTCCATGTGAAGGAATTATAATGGAGAATATAAATTTAGTAGGGGAAAGTGGAAAACCATCAGAGGCTACGTGCAAAAATGTCCATTTTAACAATGCTGAACATGTTACACCACACTGCACTTCACTAGAAATTTCAGAGGATGAAGCTCTTTTGTATAATTATTAA
Download sequence region |
Get flanking sequences on SL2.50ch10
|
![]() ![]() |
![]() ![]() | terms associated with this mRNA |
![]() ![]() | spliced cDNA sequence, including UTRs |
>Solyc10g080210.1.1 Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
ATGGTTATCCAAAGGAATAGTATTCTCCTTCTCATTATTATTTTTGCTTCATCAATTTCAACTTGTAGAAGCAATGTTATTGATGACAATTTATTCAAACAAGTTTATGATAATATTCTTGAACAAGAATTTGCTCATGATTTTCAAGCTTATCTTTCTTATTTGAGCAAAAATATTGAAAGCAACAATAATATTGACAAGGTTGATAAAAATGGGATTAAAGTGATTAATGTACTTAGCTTTGGAGCTAAGGGTGATGGAAAAACATATGATAATATTGCATTTGAGCAAGCATGGAATGAAGCATGTTCATCTAGAACACCTGTTCAATTTGTGGTTCCTAAAAACAAGAATTATCTTCTCAAGCAAATCACCTTTTCAGGTCCATGCAGATCTTCTATTTCAGTAAAGATTTTTGGATCCTTAGAAGCATCTAGTAAAATTTCAGACTACAAAGATAGAAGGCTTTGGATTGCTTTTGATAGTGTTCAAAATTTAGTTGTTGGAGGAGGAGGAACTATCAATGGCAATGGACAAGTATGGTGGCCAAGTTCTTGCAAAATAAATAAATCACTGCCATGCAGGGATGCACCAACGGCCTTAACCTTCTGGAATTGCAAAAATTTGAAAGTGAATAATCTAAAGAGTAAAAATGCACAACAAATTCATATCAAATTTGAGTCATGCACTAATGTTGTAGCTTCAAATTTGATGATCAATGCTTCAGCAAAGAGCCCAAATACTGATGGAGTCCATGTATCAAATACTCAATATATTCAAATATCTGATACTATTATTGGAACAGGTGATGATTGTATTTCAATTGTTTCTGGATCTCAAAATGTGCAGGCCACAAATATTACTTGTGGTCCAGGTCATGGTATAAGTATTGGAAGCTTAGGATCTGGAAATTCAGAAGCTTATGTGTCTAATGTTACTGTAAATGAAGCCAAAATTATCGGTGCCGAAAATGGAGTTAGGATCAAGACTTGGCAGGGAGGATCTGGACAAGCTAGCAACATCAAATTTCTGAATGTGGAAATGCAAGACGTTAAGTATCCCATAATTATAGACCAAAACTATTGTGATCGAGTTGAACCATGTATACAACAGTTTTCAGCAGTTCAAGTGAAAAATGTGGTGTATGAGAATATCAAGGGCACAAGTGCAACAAAGGTGGCCATAAAATTTGATTGCAGCACAAACTTTCCATGTGAAGGAATTATAATGGAGAATATAAATTTAGTAGGGGAAAGTGGAAAACCATCAGAGGCTACGTGCAAAAATGTCCATTTTAACAATGCTGAACATGTTACACCACACTGCACTTCACTAGAAATTTCAGAGGATGAAGCTCTTTTGTATAATTATTAA
ATGGTTATCCAAAGGAATAGTATTCTCCTTCTCATTATTATTTTTGCTTCATCAATTTCAACTTGTAGAAGCAATGTTATTGATGACAATTTATTCAAACAAGTTTATGATAATATTCTTGAACAAGAATTTGCTCATGATTTTCAAGCTTATCTTTCTTATTTGAGCAAAAATATTGAAAGCAACAATAATATTGACAAGGTTGATAAAAATGGGATTAAAGTGATTAATGTACTTAGCTTTGGAGCTAAGGGTGATGGAAAAACATATGATAATATTGCATTTGAGCAAGCATGGAATGAAGCATGTTCATCTAGAACACCTGTTCAATTTGTGGTTCCTAAAAACAAGAATTATCTTCTCAAGCAAATCACCTTTTCAGGTCCATGCAGATCTTCTATTTCAGTAAAGATTTTTGGATCCTTAGAAGCATCTAGTAAAATTTCAGACTACAAAGATAGAAGGCTTTGGATTGCTTTTGATAGTGTTCAAAATTTAGTTGTTGGAGGAGGAGGAACTATCAATGGCAATGGACAAGTATGGTGGCCAAGTTCTTGCAAAATAAATAAATCACTGCCATGCAGGGATGCACCAACGGCCTTAACCTTCTGGAATTGCAAAAATTTGAAAGTGAATAATCTAAAGAGTAAAAATGCACAACAAATTCATATCAAATTTGAGTCATGCACTAATGTTGTAGCTTCAAATTTGATGATCAATGCTTCAGCAAAGAGCCCAAATACTGATGGAGTCCATGTATCAAATACTCAATATATTCAAATATCTGATACTATTATTGGAACAGGTGATGATTGTATTTCAATTGTTTCTGGATCTCAAAATGTGCAGGCCACAAATATTACTTGTGGTCCAGGTCATGGTATAAGTATTGGAAGCTTAGGATCTGGAAATTCAGAAGCTTATGTGTCTAATGTTACTGTAAATGAAGCCAAAATTATCGGTGCCGAAAATGGAGTTAGGATCAAGACTTGGCAGGGAGGATCTGGACAAGCTAGCAACATCAAATTTCTGAATGTGGAAATGCAAGACGTTAAGTATCCCATAATTATAGACCAAAACTATTGTGATCGAGTTGAACCATGTATACAACAGTTTTCAGCAGTTCAAGTGAAAAATGTGGTGTATGAGAATATCAAGGGCACAAGTGCAACAAAGGTGGCCATAAAATTTGATTGCAGCACAAACTTTCCATGTGAAGGAATTATAATGGAGAATATAAATTTAGTAGGGGAAAGTGGAAAACCATCAGAGGCTACGTGCAAAAATGTCCATTTTAACAATGCTGAACATGTTACACCACACTGCACTTCACTAGAAATTTCAGAGGATGAAGCTCTTTTGTATAATTATTAA
![]() ![]() | translated polypeptide sequence |
>Solyc10g080210.1.1 Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
MVIQRNSILLLIIIFASSISTCRSNVIDDNLFKQVYDNILEQEFAHDFQAYLSYLSKNIESNNNIDKVDKNGIKVINVLSFGAKGDGKTYDNIAFEQAWNEACSSRTPVQFVVPKNKNYLLKQITFSGPCRSSISVKIFGSLEASSKISDYKDRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINKSLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATCKNVHFNNAEHVTPHCTSLEISEDEALLYNY*
MVIQRNSILLLIIIFASSISTCRSNVIDDNLFKQVYDNILEQEFAHDFQAYLSYLSKNIESNNNIDKVDKNGIKVINVLSFGAKGDGKTYDNIAFEQAWNEACSSRTPVQFVVPKNKNYLLKQITFSGPCRSSISVKIFGSLEASSKISDYKDRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINKSLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATCKNVHFNNAEHVTPHCTSLEISEDEALLYNY*
![]() ![]() |
![]() ![]() | [Associate new unigene] |
Unigene ID:
[loading...]
![]() ![]() | [Associate new genbank sequence] |
AK246506 Solanum lycopersicum cDNA, clone: FC13AF02, HTC in fruit.
AH004670
M20269 L.esculentum (tomato fruit) polygalacturonase (PG) mRNA, 5' end.
X04583 Tomato mRNA for polygalacturonase-2a (PG-2a).
X05656 Tomato mRNA for polygalacturonase (PG, EC 3.2.1.15).
AJ505947 Lycopersicon esculentum partial mRNA for putative polygalacturonase (pg gene).
A15981
S73807 polygalacturonase {5' and 3' regions} [Lycopersicon esculentum=red tomatoes, cv. Jiafen 2, fruits, mRNA Partial, 252 nt, segment 1 of 2].
S73808 polygalacturonase {5' and 3' regions} [Lycopersicon esculentum=red tomatoes, cv. Jiafen 2, fruits, mRNA Partial, 222 nt, segment 2 of 2].
AH004670
M20269 L.esculentum (tomato fruit) polygalacturonase (PG) mRNA, 5' end.
X04583 Tomato mRNA for polygalacturonase-2a (PG-2a).
X05656 Tomato mRNA for polygalacturonase (PG, EC 3.2.1.15).
AJ505947 Lycopersicon esculentum partial mRNA for putative polygalacturonase (pg gene).
A15981
S73807 polygalacturonase {5' and 3' regions} [Lycopersicon esculentum=red tomatoes, cv. Jiafen 2, fruits, mRNA Partial, 252 nt, segment 1 of 2].
S73808 polygalacturonase {5' and 3' regions} [Lycopersicon esculentum=red tomatoes, cv. Jiafen 2, fruits, mRNA Partial, 222 nt, segment 2 of 2].
Other genome matches | None |
![]() ![]() | [Associate publication] [Matching publications] |
Pollen specific cDNA clones from Zea mays.
Biochimica et biophysica acta (1991)
Show / hide abstract
Show / hide abstract
We have cloned and sequenced four pollen-specific cDNAs. None of the clones are complete at their 5' ends. One of the clones shows significant homology to the tomato fruit-ripening polygalacturonase and to a pollen-specific polygalacturonase from Oenothera. The other three clones have no significant homologies to any reported sequence.
Rogers, HJ. Allen, RL. Hamilton, WD. Lonsdale, DM.
Biochimica et biophysica acta.
1991.
1089(3).
411-3.
Sequencing and identification of a cDNA clone for tomato polygalacturonase.
Nucleic acids research (1986)
Show / hide abstract
Show / hide abstract
The 2a isoenzyme of tomato polygalacturonase was purified from ripe fruit and characterised. The N-terminal amino acid sequence of the protein was determined in order to identify polygalacturonase cDNA clones. The nucleotide sequence of a ripening-related cDNA (pTOM 6) was determined and found to encode the N-terminal sequence of mature polygalacturonase 2a. The complete open reading frame encodes a polypeptide of molecular weight 50,051, including a putative pre-sequence of 71 amino acids.
Grierson, D. Tucker, GA. Keen, J. Ray, J. Bird, CR. Schuch, W.
Nucleic acids research.
1986.
14(21).
8595-603.
Cloning of polygalacturonase (PG) cDNA and inhibition effects of its antisense RNA on the expression of PG gene in transgenic tomato plants.
Chinese journal of biotechnology (1994)
Show / hide abstract
Show / hide abstract
We have amplified a 1.5-kb PG cDNA including its complete open reading frame, using two primers specific to PG gene and PCR technique. Its fidelity and correctness were confirmed by restriction mapping and partial DNA sequencing. The PG gene was then inserted into a binary vector, pBin437, in an inverted orientation between the 35S promoter with duplicated enhancers and the Nos3' transcriptional termination sequence, and the resulting plasmid pBPG was introduced into LBA 4404. The A. tumefaciens harboring pBPG was used to transform tomato plants. Sixty kanamycin-resistant transformants were selected. PCR detection showed two-third of the transformed plants tested (30 plants) contain the exogenous PG gene. The PG activity assay and SDS-PAGE analysis of proteins from ripening fruit cell wall showed that the PG activity in transgenic tomato plants were inhibited in different extent. One of them, plant 3, gave only 7% PG activity compared with the control (100%). These results suggest that the expression of the anti-PG gene has effectively inhibited the expression of endogenous PG gene. The effect of low-level PG activity on tomato fruit ripening and storage is being investigated.
Ju, R. Tian, Y. Shen, Q. Liu, C. Mang, K.
Chinese journal of biotechnology.
1994.
10(2).
67-74.
![]() ![]() | [Add ontology annotations] |
[loading...]
![]() ![]() |
- Genomic details
User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Your Lists
Public Lists
List Contents
List Validation Report: Failed
Elements not found:
Optional: Add Missing Accessions to A List
Mismatched case
Click the Adjust Case button to align the case in the list with what is in the database.
Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
List elements matching a synonym
Multiple synonym matches
Fuzzy Search Results
Synonym Search Results
Available Seedlots
Your Datasets
Public Datasets
Dataset Contents
Dataset Validation Failed
Elements not found:
Your Calendar
Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?
Add New Event
Event Info
Attribute | Value |
---|---|
Project Name: | |
Start Date: | |
End Date: | |
Event Type: | |
Event Description: | |
Event Web URL: |
Edit Event
Login
Forgot Username
If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.
Reset Password
To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.
Create New User
Working
