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Potato locus patatin
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Sequence annotations
Sequence annotations
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| Genome features | None |
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SGN Unigenes
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GenBank accessions
GenBank accessions
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DQ274466 Solanum tuberosum patatin group F mRNA, partial cds.
DQ274475 Solanum tuberosum patatin group O mRNA, partial cds.
DQ274476 Solanum tuberosum patatin group P mRNA, partial cds.
DQ274227 Solanum tuberosum PCR11 patatin protein mRNA, partial cds.
DQ274266 Solanum tuberosum plasN8 patatin protein mRNA, partial cds.
DQ274273 Solanum tuberosum PCR25 patatin protein mRNA, partial cds.
DQ274282 Solanum tuberosum PCR14 patatin protein mRNA, partial cds.
DQ274286 Solanum tuberosum PCR11 patatin protein mRNA, partial cds.
DQ274292 Solanum tuberosum PCR12 patatin protein mRNA, partial cds.
DQ274304 Solanum tuberosum plasN2 patatin protein mRNA, partial cds.
DQ274307 Solanum tuberosum PCR48 patatin protein mRNA, partial cds.
DQ274322 Solanum tuberosum PCR10 patatin protein mRNA, partial cds.
DQ274323 Solanum tuberosum PCR11 patatin protein mRNA, partial cds.
DQ274324 Solanum tuberosum PCR35 patatin protein mRNA, partial cds.
DQ274330 Solanum tuberosum PCR19 patatin protein mRNA, partial cds.
DQ274331 Solanum tuberosum PCR14 patatin protein mRNA, partial cds.
DQ274350 Solanum tuberosum PCR12 patatin protein mRNA, partial cds.
DQ274353 Solanum tuberosum PCR04 patatin protein mRNA, partial cds.
DQ274355 Solanum tuberosum PCR29 patatin protein mRNA, partial cds.
DQ274358 Solanum tuberosum PCR28 patatin protein mRNA, partial cds.
DQ274369 Solanum tuberosum PCR01 patatin protein mRNA, partial cds.
DQ274370 Solanum tuberosum PCR04 patatin protein mRNA, partial cds.
DQ274371 Solanum tuberosum PCR14 patatin protein mRNA, partial cds.
DQ274382 Solanum tuberosum PCR25 patatin protein mRNA, partial cds.
DQ274389 Solanum tuberosum PCR23 patatin protein mRNA, partial cds.
DQ274396 Solanum tuberosum PCR33 patatin protein mRNA, partial cds.
DQ274398 Solanum tuberosum PCR36 patatin protein mRNA, partial cds.
DQ274403 Solanum tuberosum PCR46 patatin protein mRNA, partial cds.
DQ274404 Solanum tuberosum PCR51 patatin protein mRNA, partial cds.
DQ274406 Solanum tuberosum PCR53 patatin protein mRNA, partial cds.
DQ274407 Solanum tuberosum plas2L patatin protein mRNA, partial cds.
DQ274411 Solanum tuberosum PCR08 patatin protein mRNA, partial cds.
DQ274417 Solanum tuberosum PCR29 patatin protein mRNA, partial cds.
DQ274419 Solanum tuberosum PCR09 patatin protein mRNA, partial cds.
DQ274421 Solanum tuberosum plasJ8 patatin protein mRNA, partial cds.
DQ274422 Solanum tuberosum plasK8 patatin protein mRNA, partial cds.
DQ274423 Solanum tuberosum PCR12 patatin protein mRNA, partial cds.
DQ274426 Solanum tuberosum plasB8 patatin protein mRNA, partial cds.
DQ274433 Solanum tuberosum plasI4 patatin protein mRNA, partial cds.
DQ274436 Solanum tuberosum plasD4 patatin protein mRNA, partial cds.
DQ274441 Solanum tuberosum plasB4 patatin protein mRNA, partial cds.
DQ274446 Solanum tuberosum plasO8 patatin protein mRNA, partial cds.
DQ274451 Solanum tuberosum plasF2 patatin protein mRNA, partial cds.
DQ274456 Solanum tuberosum PCR21 patatin protein mRNA, partial cds.
DQ274459 Solanum tuberosum PCR27 patatin protein mRNA, partial cds.
DQ274475 Solanum tuberosum patatin group O mRNA, partial cds.
DQ274476 Solanum tuberosum patatin group P mRNA, partial cds.
DQ274227 Solanum tuberosum PCR11 patatin protein mRNA, partial cds.
DQ274266 Solanum tuberosum plasN8 patatin protein mRNA, partial cds.
DQ274273 Solanum tuberosum PCR25 patatin protein mRNA, partial cds.
DQ274282 Solanum tuberosum PCR14 patatin protein mRNA, partial cds.
DQ274286 Solanum tuberosum PCR11 patatin protein mRNA, partial cds.
DQ274292 Solanum tuberosum PCR12 patatin protein mRNA, partial cds.
DQ274304 Solanum tuberosum plasN2 patatin protein mRNA, partial cds.
DQ274307 Solanum tuberosum PCR48 patatin protein mRNA, partial cds.
DQ274322 Solanum tuberosum PCR10 patatin protein mRNA, partial cds.
DQ274323 Solanum tuberosum PCR11 patatin protein mRNA, partial cds.
DQ274324 Solanum tuberosum PCR35 patatin protein mRNA, partial cds.
DQ274330 Solanum tuberosum PCR19 patatin protein mRNA, partial cds.
DQ274331 Solanum tuberosum PCR14 patatin protein mRNA, partial cds.
DQ274350 Solanum tuberosum PCR12 patatin protein mRNA, partial cds.
DQ274353 Solanum tuberosum PCR04 patatin protein mRNA, partial cds.
DQ274355 Solanum tuberosum PCR29 patatin protein mRNA, partial cds.
DQ274358 Solanum tuberosum PCR28 patatin protein mRNA, partial cds.
DQ274369 Solanum tuberosum PCR01 patatin protein mRNA, partial cds.
DQ274370 Solanum tuberosum PCR04 patatin protein mRNA, partial cds.
DQ274371 Solanum tuberosum PCR14 patatin protein mRNA, partial cds.
DQ274382 Solanum tuberosum PCR25 patatin protein mRNA, partial cds.
DQ274389 Solanum tuberosum PCR23 patatin protein mRNA, partial cds.
DQ274396 Solanum tuberosum PCR33 patatin protein mRNA, partial cds.
DQ274398 Solanum tuberosum PCR36 patatin protein mRNA, partial cds.
DQ274403 Solanum tuberosum PCR46 patatin protein mRNA, partial cds.
DQ274404 Solanum tuberosum PCR51 patatin protein mRNA, partial cds.
DQ274406 Solanum tuberosum PCR53 patatin protein mRNA, partial cds.
DQ274407 Solanum tuberosum plas2L patatin protein mRNA, partial cds.
DQ274411 Solanum tuberosum PCR08 patatin protein mRNA, partial cds.
DQ274417 Solanum tuberosum PCR29 patatin protein mRNA, partial cds.
DQ274419 Solanum tuberosum PCR09 patatin protein mRNA, partial cds.
DQ274421 Solanum tuberosum plasJ8 patatin protein mRNA, partial cds.
DQ274422 Solanum tuberosum plasK8 patatin protein mRNA, partial cds.
DQ274423 Solanum tuberosum PCR12 patatin protein mRNA, partial cds.
DQ274426 Solanum tuberosum plasB8 patatin protein mRNA, partial cds.
DQ274433 Solanum tuberosum plasI4 patatin protein mRNA, partial cds.
DQ274436 Solanum tuberosum plasD4 patatin protein mRNA, partial cds.
DQ274441 Solanum tuberosum plasB4 patatin protein mRNA, partial cds.
DQ274446 Solanum tuberosum plasO8 patatin protein mRNA, partial cds.
DQ274451 Solanum tuberosum plasF2 patatin protein mRNA, partial cds.
DQ274456 Solanum tuberosum PCR21 patatin protein mRNA, partial cds.
DQ274459 Solanum tuberosum PCR27 patatin protein mRNA, partial cds.
| Other genome matches | None |
Literature annotations [1]
Literature annotations [1]
| [Associate publication] [Matching publications] |
Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development.
Genetics (2006)
Show / hide abstract
Show / hide abstract
The patatin multicopy gene family encodes the major storage protein in potato tubers and is organized as a single cluster in the potato genome. We sequenced a 154-kb bacterial artificial chromosome (BAC) clone containing a portion of the patatin gene cluster. Two putatively functional patatin genes were found in this BAC. These two genes are embedded within arrays of patatin pseudogenes. Using a chromatin immunoprecipitation method we demonstrate that the dramatic increase of patatin gene expression during the transition from stolons to tubers coincides with an increase of histone H4 lysine acetylation. We used 3' rapid amplification of cDNA ends to profile expression of different patatin genes during tuber development. The profiling results revealed differential expression patterns of specific patatin gene groups throughout six different stages of tuber development. One group of patatin gene transcripts, designated patatin gene group A, was found to be the most abundant group during all stages of tuber development. Other patatin gene groups, with a 48-bp insertion in the 3'-untranslated region, are not expressed in stolons but display a gradual increase in expression level following the onset of tuberization. These results demonstrate that the patatin genes exhibit alterations in chromatin state and differential transcriptional regulation during the developmental transition from stolons into tubers, in which there is an increased demand for protein storage.
Stupar, RM. Beaubien, KA. Jin, W. Song, J. Lee, Mi. Wu, C. Zhang, Hong. Han, B. Jiang, J.
Genetics.
2006.
172(2).
1263-75.
Ontology annotations (7)
Ontology annotations (7)
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