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Potato locus Potato 4-coumarate CoA ligase
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases
Links to external databases
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| Registry name: | None | [Associate registry name] |
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Notes and figures (0)
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| Image | Description | Type |
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Accessions and images (0)
Accessions and images (0)
| [Associate accession] |
Accession name:
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| Alleles (0) | None | [Add new Allele] |
Associated loci (0)
Associated loci (0)
| [Associate new locus] |
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| Associated loci - graphical view | None |
SolCyc links
SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>PGSC0003DMG400014223 PGSC_DMv3_219_ch03:43156718..43159972
AACACAAACTCTTGATATATTTCTTTCCCACAAAAAAATACTTTTGATACCTTATCATCACATAATAATATGAAAAGATGAATAAAAGAAGTCTTATAAATTAATTTACAGACATATTTCGTCCGTTGCCAAACTGGCAATTATATTGATCGAACATAAGGTACAAATCAAACAACATATAGTATCTCTAAAAATGGTGAATCTTGCTTTGGTTATTGCCTCCATCAATTTGAAATACCAGCAGCCAGTCTAGCTCTTAAATCTTTTCTCAGAATTTTTCCTGACGGAGATTTTGGTACCGTCTCTACGAAAAATACACGCTTTATTCTCTTATAGAATATCACCTGCAAAATTTTGAAAAACATATAAAAAATGAATCACTTAATGTTTACTATGCACTTTTATTCAAACACATAATTGTTTCGAGATGAAACAAACCTGCTTGGAGATGAAATCCTTGACTTCATCCTCAGTAATGGTAGATCCATTTGATCTAACAACAAAAGCCACTGGAACTTCTCCCGCTTGTTCATCTATCATTCTGTCCAACACAATTTAACAAATTATCAGAATTTAGACCATTTTTTGAGCTAGCTGTATCGTACGTTAGGCATTTATAGTTGTACATTACAAAAATTATAACTAACTTACGGGACAACAGCAGCATCAGAAATGTCGGGGTGGTTGATAAGAAGAGCTTCAAGCTCGGCAGGCGCCACTTGAAATCCTTTGTATTTGATCAATTCCTTCAATCGGTCCACAATGAAAAGCTCATCATCATCGTCAATGAATCCAATATCGCCAGTGTGTAACCATCCTTCTTTTTCTATTGTTCTAGCTGTGGCCTCGGGATCATTCAAGTAACCTACAAAGAAATTATCATTGTTTTTATTAATATATAATTAAATAAATAAAAATATGCGATAACTTAAATTTTTAAGACCAAAGTCGAAAAGTGGTTGGGCAGGTGGTTGAATGAATATACACCGAATAGTTCCACAACTTTATGGTAAAAGGCTCCACATGTTTCAATAGGTAATAAGAAAGGTACTCTAAACTTTATTTCAACTTGTATGTTTTACTTTTACTTTTTTAATCTTTTAAAAAGAATATACTTTTTATTTTTCGAGATTTTTTTTAATTTTAAACTTTCTGATTTAATAATATCAATCTTGTATTCAATAAGTAAAAAAAGTTCTTTTGCTTTTAAAAAAAATTTGGTAGGAGTGGTTGGTGAGCTTTTGATGCTAGTATCAATTTTTGTGGCGTTTGAAATATTAATCAAATCAACATAAGTTTTACTCTGTTGGTATATGAATGACCCCTAATGCATCTTGATCTAGGTCCACTAGTTGGTATATTTATTATTCTTAACAAACTGTGTTATTATCTATATACGTATGTACCTAATAAAAACGTGTATTTTGGAAATATATGTAAATGGTCACCTAACTAAAATACTAATTTGACACGTAACTTAAGTTTACGAAGAATATTCACGCAAAAGATTTTAGCATACCTTTCATGATTTGATCACCTCTAATGCAAATTTCACCGGGTTGGTTACGGGGCAGAGAGCAACCCGTATCCGGATCCACAATTTTCATCTCCGCGTTCCTCACAACAGTACCACATGCCCCTGATTTAATATCAAACGGTTCTTTCGCAAATGCCAAACACATCGCCAGCACAGGACCGGCCTCCGTCATTCCATAACCCTATTTTAATTTAATAATTTATTAATTAGTCTATAAATTTAAATTTGGAAATTTATTCAACAATAATAAAATAATACAGTGTATCCTGGCTGGCTAGTCACTATCAAGAAACCATTATAAGGCAAATGTATTGTTAAAAATCAAAATCAATGTCCACAAAGGCGTGCAGTATTCTTGTACACATTTTTTTTAAGAATAGACGTTAACCAACCAATATTTACTTAGTCAAGCAAAATACATTTGTAACTCCAAAATTAGGAAAACTATAACGTGTAATTAAAATTAATTTTTTTTGGTTTCAGTGTATCTCTTAAAAATATTGTTTTTGGGAAACTAGCGTATCAGCACATGGATGGTATTTCAGGATAAGAACATGAAGATTAAAAGATCAATAACTTCGGCTAAATTTAAATTCTAACTCGGCGCAAAAGAAAATAATATTTACCTGACCAAGTTTGGCGTTAGGGAATTTTGCTCGGACGGCATCTTCAAGTTCCTTTCCTAATGGTGCAGCACCAGACATGACTGTTCTTACTGATGAAAGATCGTAGTTATGAACTAATGGACTCTTAGCAATGGCGAGAACAATAGGCGGAACAAATGGTCCAATTGTCACTTTATGCTTCGGTATCAACTCTAAAAACTGAGCAATGTCGAATTTCTGCATAATCAAAATTGCTGCTCCGACTCTCAATGCACAGAGCAAAACAGAATTGAGTGAGTAAATATGGAACAAAGGCAACACGCACATCAACACATCATCGCTGTGCATATACAAATTAGCATTTTCTCCATCAACTTGTTGTGCAACGCTTGTTACTAATCCTTTGTGTGTCAACATCACCCCTTTCGGCAGCCCGGTAGTCCCGGAGGAATACGGCAGCGCTACGACATCGTCCGGCTGGATTTTCACATCAGGAATTTCGTGTTCGTCGGATTGAATCAATTCGGAGAAATGAACACAACCTTCCGGTGCTGAATCGACGCATATTACCTTCAAATCATTTTCAATTGCGTAGTCCTTCACTTTCCCCGCAAAACAAGCTTGCGTGATAACAATCTTAGCACTTGAGGCTTTGGCTTGCTTTACTACCTCTGCTGGTGTAAACAGAGGATTAGCCATTGTTGAAATTGCTCCTAGATACGATGCGCCAATAAACGCAAACACAAATTCAGGGCAATTAGGCAAGAGGATCATGATTGTATCCTTCTGTTGGATCCCCAATTTGTTAAGACCAACAGCAACTTTTCTCGAAGTAAGTTCAACTTCAGCATAAGTATAGATTCGATCATTTGCACCATCAATCAAACAGGGCCGGGAATGAAACTCCGATAGATTTTCAAAGCAATAAGAATGTAAAGGCAAATGTTTAGGGATGTAAATATCAGGGAGTTTAGATCGAAAGATTAAATCTCCTGATTGCTTTGTTTCGGTATCCATCGGCATCTTGAGAGCTAAAAAAGGAAAAATTTGGAGCACACTGAAAAGCTAAAAGGGAAAAGTAGATTTTTAGCTATGGTGTCCTGAAGATGAATG
AACACAAACTCTTGATATATTTCTTTCCCACAAAAAAATACTTTTGATACCTTATCATCACATAATAATATGAAAAGATGAATAAAAGAAGTCTTATAAATTAATTTACAGACATATTTCGTCCGTTGCCAAACTGGCAATTATATTGATCGAACATAAGGTACAAATCAAACAACATATAGTATCTCTAAAAATGGTGAATCTTGCTTTGGTTATTGCCTCCATCAATTTGAAATACCAGCAGCCAGTCTAGCTCTTAAATCTTTTCTCAGAATTTTTCCTGACGGAGATTTTGGTACCGTCTCTACGAAAAATACACGCTTTATTCTCTTATAGAATATCACCTGCAAAATTTTGAAAAACATATAAAAAATGAATCACTTAATGTTTACTATGCACTTTTATTCAAACACATAATTGTTTCGAGATGAAACAAACCTGCTTGGAGATGAAATCCTTGACTTCATCCTCAGTAATGGTAGATCCATTTGATCTAACAACAAAAGCCACTGGAACTTCTCCCGCTTGTTCATCTATCATTCTGTCCAACACAATTTAACAAATTATCAGAATTTAGACCATTTTTTGAGCTAGCTGTATCGTACGTTAGGCATTTATAGTTGTACATTACAAAAATTATAACTAACTTACGGGACAACAGCAGCATCAGAAATGTCGGGGTGGTTGATAAGAAGAGCTTCAAGCTCGGCAGGCGCCACTTGAAATCCTTTGTATTTGATCAATTCCTTCAATCGGTCCACAATGAAAAGCTCATCATCATCGTCAATGAATCCAATATCGCCAGTGTGTAACCATCCTTCTTTTTCTATTGTTCTAGCTGTGGCCTCGGGATCATTCAAGTAACCTACAAAGAAATTATCATTGTTTTTATTAATATATAATTAAATAAATAAAAATATGCGATAACTTAAATTTTTAAGACCAAAGTCGAAAAGTGGTTGGGCAGGTGGTTGAATGAATATACACCGAATAGTTCCACAACTTTATGGTAAAAGGCTCCACATGTTTCAATAGGTAATAAGAAAGGTACTCTAAACTTTATTTCAACTTGTATGTTTTACTTTTACTTTTTTAATCTTTTAAAAAGAATATACTTTTTATTTTTCGAGATTTTTTTTAATTTTAAACTTTCTGATTTAATAATATCAATCTTGTATTCAATAAGTAAAAAAAGTTCTTTTGCTTTTAAAAAAAATTTGGTAGGAGTGGTTGGTGAGCTTTTGATGCTAGTATCAATTTTTGTGGCGTTTGAAATATTAATCAAATCAACATAAGTTTTACTCTGTTGGTATATGAATGACCCCTAATGCATCTTGATCTAGGTCCACTAGTTGGTATATTTATTATTCTTAACAAACTGTGTTATTATCTATATACGTATGTACCTAATAAAAACGTGTATTTTGGAAATATATGTAAATGGTCACCTAACTAAAATACTAATTTGACACGTAACTTAAGTTTACGAAGAATATTCACGCAAAAGATTTTAGCATACCTTTCATGATTTGATCACCTCTAATGCAAATTTCACCGGGTTGGTTACGGGGCAGAGAGCAACCCGTATCCGGATCCACAATTTTCATCTCCGCGTTCCTCACAACAGTACCACATGCCCCTGATTTAATATCAAACGGTTCTTTCGCAAATGCCAAACACATCGCCAGCACAGGACCGGCCTCCGTCATTCCATAACCCTATTTTAATTTAATAATTTATTAATTAGTCTATAAATTTAAATTTGGAAATTTATTCAACAATAATAAAATAATACAGTGTATCCTGGCTGGCTAGTCACTATCAAGAAACCATTATAAGGCAAATGTATTGTTAAAAATCAAAATCAATGTCCACAAAGGCGTGCAGTATTCTTGTACACATTTTTTTTAAGAATAGACGTTAACCAACCAATATTTACTTAGTCAAGCAAAATACATTTGTAACTCCAAAATTAGGAAAACTATAACGTGTAATTAAAATTAATTTTTTTTGGTTTCAGTGTATCTCTTAAAAATATTGTTTTTGGGAAACTAGCGTATCAGCACATGGATGGTATTTCAGGATAAGAACATGAAGATTAAAAGATCAATAACTTCGGCTAAATTTAAATTCTAACTCGGCGCAAAAGAAAATAATATTTACCTGACCAAGTTTGGCGTTAGGGAATTTTGCTCGGACGGCATCTTCAAGTTCCTTTCCTAATGGTGCAGCACCAGACATGACTGTTCTTACTGATGAAAGATCGTAGTTATGAACTAATGGACTCTTAGCAATGGCGAGAACAATAGGCGGAACAAATGGTCCAATTGTCACTTTATGCTTCGGTATCAACTCTAAAAACTGAGCAATGTCGAATTTCTGCATAATCAAAATTGCTGCTCCGACTCTCAATGCACAGAGCAAAACAGAATTGAGTGAGTAAATATGGAACAAAGGCAACACGCACATCAACACATCATCGCTGTGCATATACAAATTAGCATTTTCTCCATCAACTTGTTGTGCAACGCTTGTTACTAATCCTTTGTGTGTCAACATCACCCCTTTCGGCAGCCCGGTAGTCCCGGAGGAATACGGCAGCGCTACGACATCGTCCGGCTGGATTTTCACATCAGGAATTTCGTGTTCGTCGGATTGAATCAATTCGGAGAAATGAACACAACCTTCCGGTGCTGAATCGACGCATATTACCTTCAAATCATTTTCAATTGCGTAGTCCTTCACTTTCCCCGCAAAACAAGCTTGCGTGATAACAATCTTAGCACTTGAGGCTTTGGCTTGCTTTACTACCTCTGCTGGTGTAAACAGAGGATTAGCCATTGTTGAAATTGCTCCTAGATACGATGCGCCAATAAACGCAAACACAAATTCAGGGCAATTAGGCAAGAGGATCATGATTGTATCCTTCTGTTGGATCCCCAATTTGTTAAGACCAACAGCAACTTTTCTCGAAGTAAGTTCAACTTCAGCATAAGTATAGATTCGATCATTTGCACCATCAATCAAACAGGGCCGGGAATGAAACTCCGATAGATTTTCAAAGCAATAAGAATGTAAAGGCAAATGTTTAGGGATGTAAATATCAGGGAGTTTAGATCGAAAGATTAAATCTCCTGATTGCTTTGTTTCGGTATCCATCGGCATCTTGAGAGCTAAAAAAGGAAAAATTTGGAGCACACTGAAAAGCTAAAAGGGAAAAGTAGATTTTTAGCTATGGTGTCCTGAAGATGAATG
| Download sequence region |
Get flanking sequences on PGSC_DMv3_219_ch03
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mRNA PGSC0003DMT400036886
mRNA PGSC0003DMT400036886
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| Ontology terms | None | terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>PGSC0003DMT400036886 4-coumarate--CoA ligase 2
CATTCATCTTCAGGACACCATAGCTAAAAATCTACTTTTCCCTTTTAGCTTTTCAGTGTGCTCCAAATTTTTCCTTTTTTAGCTCTCAAGATGCCGATGGATACCGAAACAAAGCAATCAGGAGATTTAATCTTTCGATCTAAACTCCCTGATATTTACATCCCTAAACATTTGCCTTTACATTCTTATTGCTTTGAAAATCTATCGGAGTTTCATTCCCGGCCCTGTTTGATTGATGGTGCAAATGATCGAATCTATACTTATGCTGAAGTTGAACTTACTTCGAGAAAAGTTGCTGTTGGTCTTAACAAATTGGGGATCCAACAGAAGGATACAATCATGATCCTCTTGCCTAATTGCCCTGAATTTGTGTTTGCGTTTATTGGCGCATCGTATCTAGGAGCAATTTCAACAATGGCTAATCCTCTGTTTACACCAGCAGAGGTAGTAAAGCAAGCCAAAGCCTCAAGTGCTAAGATTGTTATCACGCAAGCTTGTTTTGCGGGGAAAGTGAAGGACTACGCAATTGAAAATGATTTGAAGGTAATATGCGTCGATTCAGCACCGGAAGGTTGTGTTCATTTCTCCGAATTGATTCAATCCGACGAACACGAAATTCCTGATGTGAAAATCCAGCCGGACGATGTCGTAGCGCTGCCGTATTCCTCCGGGACTACCGGGCTGCCGAAAGGGGTGATGTTGACACACAAAGGATTAGTAACAAGCGTTGCACAACAAGTTGATGGAGAAAATGCTAATTTGTATATGCACAGCGATGATGTGTTGATGTGCGTGTTGCCTTTGTTCCATATTTACTCACTCAATTCTGTTTTGCTCTGTGCATTGAGAGTCGGAGCAGCAATTTTGATTATGCAGAAATTCGACATTGCTCAGTTTTTAGAGTTGATACCGAAGCATAAAGTGACAATTGGACCATTTGTTCCGCCTATTGTTCTCGCCATTGCTAAGAGTCCATTAGTTCATAACTACGATCTTTCATCAGTAAGAACAGTCATGTCTGGTGCTGCACCATTAGGAAAGGAACTTGAAGATGCCGTCCGAGCAAAATTCCCTAACGCCAAACTTGGTCAGGGTTATGGAATGACGGAGGCCGGTCCTGTGCTGGCGATGTGTTTGGCATTTGCGAAAGAACCGTTTGATATTAAATCAGGGGCATGTGGTACTGTTGTGAGGAACGCGGAGATGAAAATTGTGGATCCGGATACGGGTTGCTCTCTGCCCCGTAACCAACCCGGTGAAATTTGCATTAGAGGTGATCAAATCATGAAAGGTTACTTGAATGATCCCGAGGCCACAGCTAGAACAATAGAAAAAGAAGGATGGTTACACACTGGCGATATTGGATTCATTGACGATGATGATGAGCTTTTCATTGTGGACCGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCGCCTGCCGAGCTTGAAGCTCTTCTTATCAACCACCCCGACATTTCTGATGCTGCTGTTGTCCCAATGATAGATGAACAAGCGGGAGAAGTTCCAGTGGCTTTTGTTGTTAGATCAAATGGATCTACCATTACTGAGGATGAAGTCAAGGATTTCATCTCCAAGCAGGTGATATTCTATAAGAGAATAAAGCGTGTATTTTTCGTAGAGACGGTACCAAAATCTCCGTCAGGAAAAATTCTGAGAAAAGATTTAAGAGCTAGACTGGCTGCTGGTATTTCAAATTGATGGAGGCAATAACCAAAGCAAGATTCACCATTTTTAGAGATACTATATGTTGTTTGATTTGTACCTTATGTTCGATCAATATAATTGCCAGTTTGGCAACGGACGAAATATGTCTGTAAATTAATTTATAAGACTTCTTTTATTCATCTTTTCATATTATTATGTGATGATAAGGTATCAAAAGTATTTTTTTGTGGGAAAGAAATATATCAAGAGTTTGTGTT
CATTCATCTTCAGGACACCATAGCTAAAAATCTACTTTTCCCTTTTAGCTTTTCAGTGTGCTCCAAATTTTTCCTTTTTTAGCTCTCAAGATGCCGATGGATACCGAAACAAAGCAATCAGGAGATTTAATCTTTCGATCTAAACTCCCTGATATTTACATCCCTAAACATTTGCCTTTACATTCTTATTGCTTTGAAAATCTATCGGAGTTTCATTCCCGGCCCTGTTTGATTGATGGTGCAAATGATCGAATCTATACTTATGCTGAAGTTGAACTTACTTCGAGAAAAGTTGCTGTTGGTCTTAACAAATTGGGGATCCAACAGAAGGATACAATCATGATCCTCTTGCCTAATTGCCCTGAATTTGTGTTTGCGTTTATTGGCGCATCGTATCTAGGAGCAATTTCAACAATGGCTAATCCTCTGTTTACACCAGCAGAGGTAGTAAAGCAAGCCAAAGCCTCAAGTGCTAAGATTGTTATCACGCAAGCTTGTTTTGCGGGGAAAGTGAAGGACTACGCAATTGAAAATGATTTGAAGGTAATATGCGTCGATTCAGCACCGGAAGGTTGTGTTCATTTCTCCGAATTGATTCAATCCGACGAACACGAAATTCCTGATGTGAAAATCCAGCCGGACGATGTCGTAGCGCTGCCGTATTCCTCCGGGACTACCGGGCTGCCGAAAGGGGTGATGTTGACACACAAAGGATTAGTAACAAGCGTTGCACAACAAGTTGATGGAGAAAATGCTAATTTGTATATGCACAGCGATGATGTGTTGATGTGCGTGTTGCCTTTGTTCCATATTTACTCACTCAATTCTGTTTTGCTCTGTGCATTGAGAGTCGGAGCAGCAATTTTGATTATGCAGAAATTCGACATTGCTCAGTTTTTAGAGTTGATACCGAAGCATAAAGTGACAATTGGACCATTTGTTCCGCCTATTGTTCTCGCCATTGCTAAGAGTCCATTAGTTCATAACTACGATCTTTCATCAGTAAGAACAGTCATGTCTGGTGCTGCACCATTAGGAAAGGAACTTGAAGATGCCGTCCGAGCAAAATTCCCTAACGCCAAACTTGGTCAGGGTTATGGAATGACGGAGGCCGGTCCTGTGCTGGCGATGTGTTTGGCATTTGCGAAAGAACCGTTTGATATTAAATCAGGGGCATGTGGTACTGTTGTGAGGAACGCGGAGATGAAAATTGTGGATCCGGATACGGGTTGCTCTCTGCCCCGTAACCAACCCGGTGAAATTTGCATTAGAGGTGATCAAATCATGAAAGGTTACTTGAATGATCCCGAGGCCACAGCTAGAACAATAGAAAAAGAAGGATGGTTACACACTGGCGATATTGGATTCATTGACGATGATGATGAGCTTTTCATTGTGGACCGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCGCCTGCCGAGCTTGAAGCTCTTCTTATCAACCACCCCGACATTTCTGATGCTGCTGTTGTCCCAATGATAGATGAACAAGCGGGAGAAGTTCCAGTGGCTTTTGTTGTTAGATCAAATGGATCTACCATTACTGAGGATGAAGTCAAGGATTTCATCTCCAAGCAGGTGATATTCTATAAGAGAATAAAGCGTGTATTTTTCGTAGAGACGGTACCAAAATCTCCGTCAGGAAAAATTCTGAGAAAAGATTTAAGAGCTAGACTGGCTGCTGGTATTTCAAATTGATGGAGGCAATAACCAAAGCAAGATTCACCATTTTTAGAGATACTATATGTTGTTTGATTTGTACCTTATGTTCGATCAATATAATTGCCAGTTTGGCAACGGACGAAATATGTCTGTAAATTAATTTATAAGACTTCTTTTATTCATCTTTTCATATTATTATGTGATGATAAGGTATCAAAAGTATTTTTTTGTGGGAAAGAAATATATCAAGAGTTTGTGTT
Protein sequence
Protein sequence
| translated polypeptide sequence |
>PGSC0003DMT400036886 4-coumarate--CoA ligase 2
MPMDTETKQSGDLIFRSKLPDIYIPKHLPLHSYCFENLSEFHSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAIENDLKVICVDSAPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAAGISN*
MPMDTETKQSGDLIFRSKLPDIYIPKHLPLHSYCFENLSEFHSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAIENDLKVICVDSAPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLRARLAAGISN*
mRNA PGSC0003DMT400036887
mRNA PGSC0003DMT400036887
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| Ontology terms | None | terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>PGSC0003DMT400036887 4-coumarate--CoA ligase 2
TTCATCTTCAGGACACCATAGCTAAAAATCTACTTTTCCCTTTTAGCTTTTCAGTGTGCTCCAAATTTTTCCTTTTTTAGCTCTCAAGATGCCGATGGATACCGAAACAAAGCAATCAGGAGATTTAATCTTTCGATCTAAACTCCCTGATATTTACATCCCTAAACATTTGCCTTTACATTCTTATTGCTTTGAAAATCTATCGGAGTTTCATTCCCGGCCCTGTTTGATTGATGGTGCAAATGATCGAATCTATACTTATGCTGAAGTTGAACTTACTTCGAGAAAAGTTGCTGTTGGTCTTAACAAATTGGGGATCCAACAGAAGGATACAATCATGATCCTCTTGCCTAATTGCCCTGAATTTGTGTTTGCGTTTATTGGCGCATCGTATCTAGGAGCAATTTCAACAATGGCTAATCCTCTGTTTACACCAGCAGAGGTAGTAAAGCAAGCCAAAGCCTCAAGTGCTAAGATTGTTATCACGCAAGCTTGTTTTGCGGGGAAAGTGAAGGACTACGCAATTGAAAATGATTTGAAGGTAATATGCGTCGATTCAGCACCGGAAGGTTGTGTTCATTTCTCCGAATTGATTCAATCCGACGAACACGAAATTCCTGATGTGAAAATCCAGCCGGACGATGTCGTAGCGCTGCCGTATTCCTCCGGGACTACCGGGCTGCCGAAAGGGGTGATGTTGACACACAAAGGATTAGTAACAAGCGTTGCACAACAAGTTGATGGAGAAAATGCTAATTTGTATATGCACAGCGATGATGTGTTGATGTGCGTGTTGCCTTTGTTCCATATTTACTCACTCAATTCTGTTTTGCTCTGTGCATTGAGAGTCGGAGCAGCAATTTTGATTATGCAGAAATTCGACATTGCTCAGTTTTTAGAGTTGATACCGAAGCATAAAGTGACAATTGGACCATTTGTTCCGCCTATTGTTCTCGCCATTGCTAAGAGTCCATTAGTTCATAACTACGATCTTTCATCAGTAAGAACAGTCATGTCTGGTGCTGCACCATTAGGAAAGGAACTTGAAGATGCCGTCCGAGCAAAATTCCCTAACGCCAAACTTGGTCAGGGTTATGGAATGACGGAGGCCGGTCCTGTGCTGGCGATGTGTTTGGCATTTGCGAAAGAACCGTTTGATATTAAATCAGGGGCATGTGGTACTGTTGTGAGGAACGCGGAGATGAAAATTGTGGATCCGGATACGGGTTGCTCTCTGCCCCGTAACCAACCCGGTGAAATTTGCATTAGAGGTGATCAAATCATGAAAGGTTACTTGAATGATCCCGAGGCCACAGCTAGAACAATAGAAAAAGAAGGATGGTTACACACTGGCGATATTGGATTCATTGACGATGATGATGAGCTTTTCATTGTGGACCGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCGCCTGCCGAGCTTGAAGCTCTTCTTATCAACCACCCCGACATTTCTGATGCTGCTGTTGTCCCAATGATAGATGAACAAGCGGGAGAAGTTCCAGTGGCTTTTGTTGTTAGATCAAATGGATCTACCATTACTGAGGATGAAGTCAAGGATTTCATCTCCAAGCAGGTTTGTTTCATCTCGAAACAATTATGTGTTTGAATAAAAG
TTCATCTTCAGGACACCATAGCTAAAAATCTACTTTTCCCTTTTAGCTTTTCAGTGTGCTCCAAATTTTTCCTTTTTTAGCTCTCAAGATGCCGATGGATACCGAAACAAAGCAATCAGGAGATTTAATCTTTCGATCTAAACTCCCTGATATTTACATCCCTAAACATTTGCCTTTACATTCTTATTGCTTTGAAAATCTATCGGAGTTTCATTCCCGGCCCTGTTTGATTGATGGTGCAAATGATCGAATCTATACTTATGCTGAAGTTGAACTTACTTCGAGAAAAGTTGCTGTTGGTCTTAACAAATTGGGGATCCAACAGAAGGATACAATCATGATCCTCTTGCCTAATTGCCCTGAATTTGTGTTTGCGTTTATTGGCGCATCGTATCTAGGAGCAATTTCAACAATGGCTAATCCTCTGTTTACACCAGCAGAGGTAGTAAAGCAAGCCAAAGCCTCAAGTGCTAAGATTGTTATCACGCAAGCTTGTTTTGCGGGGAAAGTGAAGGACTACGCAATTGAAAATGATTTGAAGGTAATATGCGTCGATTCAGCACCGGAAGGTTGTGTTCATTTCTCCGAATTGATTCAATCCGACGAACACGAAATTCCTGATGTGAAAATCCAGCCGGACGATGTCGTAGCGCTGCCGTATTCCTCCGGGACTACCGGGCTGCCGAAAGGGGTGATGTTGACACACAAAGGATTAGTAACAAGCGTTGCACAACAAGTTGATGGAGAAAATGCTAATTTGTATATGCACAGCGATGATGTGTTGATGTGCGTGTTGCCTTTGTTCCATATTTACTCACTCAATTCTGTTTTGCTCTGTGCATTGAGAGTCGGAGCAGCAATTTTGATTATGCAGAAATTCGACATTGCTCAGTTTTTAGAGTTGATACCGAAGCATAAAGTGACAATTGGACCATTTGTTCCGCCTATTGTTCTCGCCATTGCTAAGAGTCCATTAGTTCATAACTACGATCTTTCATCAGTAAGAACAGTCATGTCTGGTGCTGCACCATTAGGAAAGGAACTTGAAGATGCCGTCCGAGCAAAATTCCCTAACGCCAAACTTGGTCAGGGTTATGGAATGACGGAGGCCGGTCCTGTGCTGGCGATGTGTTTGGCATTTGCGAAAGAACCGTTTGATATTAAATCAGGGGCATGTGGTACTGTTGTGAGGAACGCGGAGATGAAAATTGTGGATCCGGATACGGGTTGCTCTCTGCCCCGTAACCAACCCGGTGAAATTTGCATTAGAGGTGATCAAATCATGAAAGGTTACTTGAATGATCCCGAGGCCACAGCTAGAACAATAGAAAAAGAAGGATGGTTACACACTGGCGATATTGGATTCATTGACGATGATGATGAGCTTTTCATTGTGGACCGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCGCCTGCCGAGCTTGAAGCTCTTCTTATCAACCACCCCGACATTTCTGATGCTGCTGTTGTCCCAATGATAGATGAACAAGCGGGAGAAGTTCCAGTGGCTTTTGTTGTTAGATCAAATGGATCTACCATTACTGAGGATGAAGTCAAGGATTTCATCTCCAAGCAGGTTTGTTTCATCTCGAAACAATTATGTGTTTGAATAAAAG
Protein sequence
Protein sequence
| translated polypeptide sequence |
>PGSC0003DMT400036887 4-coumarate--CoA ligase 2
MPMDTETKQSGDLIFRSKLPDIYIPKHLPLHSYCFENLSEFHSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAIENDLKVICVDSAPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVCFISKQLCV*
MPMDTETKQSGDLIFRSKLPDIYIPKHLPLHSYCFENLSEFHSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAIENDLKVICVDSAPEGCVHFSELIQSDEHEIPDVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSDDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVCFISKQLCV*
Gene model matches
Gene model matches
|
SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
[loading...]
GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
M62755 Potato 4-coumarate--CoA ligase (St4C1-1) gene, complete cds.
| Other genome matches | None |
Literature annotations [1]
Literature annotations [1]
| [Associate publication] [Matching publications] |
Structural comparison, modes of expression, and putative cis-acting elements of the two 4-coumarate: CoA ligase genes in potato.
The Journal of biological chemistry (1991)
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Show / hide abstract
4-Coumarate:CoA ligase (4CL), a key enzyme of phenylpropanoid metabolism in plants, is encoded in potato (Solanum tuberosum L.) by two structurally similar genes (St4cl-1, St4cl-2). Computer-based sequence analyses revealed similarities at the amino acid sequence level with other enzymes dependent on ATP for activation of aromatic carboxylic acids, e.g. some bacterial peptide synthetases. All these enzymes have a common seven amino acid sequence motif containing one cysteine residue. Using an assay on the basis of the polymerase chain reaction, we show that the mRNAs from both 4CL genes accumulate to equal levels in suspension-cultured cells and whole plant tissues, independent of various kinds of activating stimulus applied and of the overall transcriptional activity of the genes. The apparent lack of differential expression, together with the fact that both 4CL genes and proteins are nearly identical in structure, make it unlikely that 4CL isoforms in potato have specific roles in metabolic channeling. Constitutive in vivo footprints in the TATA-box proximal region of the St4cl-1 promoter define putative cis-acting elements which may be involved in the responses of the 4CL genes to various endogenous and exogenous stimuli.
Becker, André. Schulze, Lefert. Hahlbrock, K.
The Journal of biological chemistry.
1991.
266(13).
8551-9.
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