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Tomato locus defense signal transduction Sgt1-2
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases
Links to external databases
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defense signal transduction Sgt1-2 is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch03, position: 2204007
Please cite Razifard et al.
| Registry name: | None | [Associate registry name] |
Notes and figures (0)
Notes and figures (0)
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Accessions and images (0)
Accessions and images (0)
| [Associate accession] |
Accession name:
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| Alleles (0) | None | [Add new Allele] |
Associated loci (0)
Associated loci (0)
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| Associated loci - graphical view | None |
SolCyc links
SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc03g007670.2 SL2.50ch03:2200919..2205536
TATATATAAAGAGCCGAAATAATCCAAGGTCTCTGTAGTCTCAAAAAAATCCATTCCAATTGCCATTTCACTCTTGTTCTAGATACTTCTTTGGAGTTCCTCTCCATCACCAATGGCGTCCGATCTGGAGACTAGGGCTAAAGAGGCATTCATTGACGACCACTTTGAACTCGCCGTTGACCTGTACACTCAAGCCATAACGCTGAGCCCTAAGAACCCTGAACTTTTCGCCGACCGTGCTCAGGCCAATATCAAACTCAACTACTTCACTGGTATCATCCTTTCTAAACCTAATTTATCCGTTAATTTCATTATTTGTAAGAAACGGCGTTGATTCTATTATTTTGCTATGTTATTTGTGTTCTGCGATTTATAGAATTGGTTGAAGGTTTTGTGGATTTGTGCTTCGTTTTGTGTTTTCGGCGTATTTGTTTCTCTGCTTGATTACGAAAGTTAATTACCGCTATCTGCTACTTGACTGCGTGGGGTTTATGGTGAAGAGTTTGTTAAGCCTTTTTTTGGATTACGGTTTTAATGTGTTGTTGTTACGCTTTTATTAGATCCGGTGTTTGTTTTATTGGTTAAGTGTTAGATTTAGAGAATCTTGGGAATCCTAATTTGACTTATAAGTTTAATTGGTTGTTTAGTCTTGGAATGAGATGAACAGGGAGGATTCACAAAGTCAAACTCTATTGTCTCTTTTTTTGGTAACAGTAAAAGCCGTGGTTGTTGAAATTTTTCTCCTGTGTTATATCTCGTTAGCTTTCTTATGTTCTATGAGATTGAATGAGGTTCATAGGCATTGCATCCTGCAAAGATATCTGTATATGTATGCATCAACGTCTTGTATTTTCTGAATACTACTTGTATGTATCTGCATACATCATCATATTTCACTATTTATGGTGTTAATAATTATCATTCTAAACGGGGTAGCAATTTTAATAATGTTTACATGTGAGCAGAAGCTGTTGTTGATGCGAACAAGGCCATTGAGTTGGATCCTACAATGTCAAAAGCATATTTACGCAAGGGGTGAGTATATAATTACTTTCTTATTCCTGTGCGTAAATCTTGTTTAGATTTTGTGGAGTTTTATTACTTTTTCACTACATGTTTTTGTTGCTCTCATATCATGTGCTATGGTATTGTTGTCTTGATCTAACAACGTTCACCTGAAAACTGACATGGTGATTTAGCTCTTGTGATTTGGGATGTTGCAATAGGTGATGGTGAAATCTAGATTTGTCATTTTCATGATTTATTGGTTTGTTGAATATGTCTGGTTTTCATCATCCTCCAAGAAAGACTCTGCAGCATCATAAATTTTTCCACCACCTCTCGACTGTAATTCCCCAAAAATGTTACTACAGTACCATGTAATTATTAAGTATTTTATAATATACTTTCCATTGTTTTTGCTAGTCCAGTATACTAAAAGTATTTCTCTCCTTGTCCATTTTAGCAAATCAAAGGAGATTTATAACTTTCTTCCGATGCTCTCTTTATCATTATGTACCCACACTTTCCAATCATTGCTTTATTGATAGAACTTTAATAACCATTAATAGGGATAATTTAAATAAACAAACTCTTAACGAATAATTATCAAGGGAAATGTAAAGTCAATACTGGACTGGTGGAAAGCAATGGAGGGAGAATTTTGTTTAGGTTTTACCTGCACTTTTGATAATCAACAAAGACTAAGTGAAACAACACTATTTTTTGCAGTAGCACTTGCTATCTGTCACTTCTTGTTTTACTAGATACTGCATTGTTGAATTAATTTTTTTTTTGTTACTTTTCTAGGTTGGCCTGTATGAAGCTTGAAGAATACCAAACTGCAAAGGCAGCTTTGGAAATTGGTGCCAGTTTAGCACCAGGAGAGTTAAGATTCAGTAAGCTAATGAAAGAATGTGATGAACATATTGCAGGTAAAGTAGCGCTTTTGTGGCTATTCTAACATTTCCCAAATCTGTTCAATTCTAACATAAACTCATGGCATCTTTGGAGACTTTGGTATTATATAGGTAAATTAGTGCTTTTGTGGCTCTTCTAACATTTCCCAAATCTGGTCAGTTCTAACATCAACTCATGGCATCTATGGAGACTTGGTGATGATATGAGAAATTGGCAGTTTATAGTTTAAGAAAATACCAAAAGCCACGTTTTTTTTTTTTAATGATTGTGGTTATTTTCCTGACAGATTTATGTGTATATTTCACTATGCTATTAGCAACATTAAGTGCTTAGTGAAACTAATCGATGGTCTTTTGCTCCAAATTCAGAGGAAGCTGGCGAATTGCCTAATCTGTCGGTGGATAAAACCTCAGCTAGTGTTGTTGCACATCCTGCATCTGAGTTACCGGACAATGTTGCTATTGCGCCTGAAGGTGCTCAACCAACGGTCAACCAGTCCCATCAAGGATCTGCTGCCAAACCAAAATACAGGTTTTATGCCAAAGCTTTTGCTGTGTTAGTGAGTCGTTTAAGTCCAGTAACTCTGAGATAGTACCTTTTGATAGGGTAAATAATCTTATCAATGTGGGGATACTTGTGAAATTGTAATAACAAAGTACTACTACAGTCAAACCTAGTGTCAGACACATTTGATGTTTAGATCTCATTTTGCTGTTATAAACAAAAGTACACAAAAAATTAGTTAATGGTATTGTGTACAGAGAAGAATGAATGTATTTCTCAACCAATTTAACCAATTTTTTTTGTATGAATGTAAAGAAGGTGAACATCTCGTGAAGTTATGACCATAATTGATTGGCACTATTTAAATACAATTTTTTTCTTTCTTGGAGAACATGGGCTAATCTGATGTATGTAATTGCAGACATGAATTTTATCAGAAACCAGAGGAGGTGGTGGTGACTATATTTGCCAAGGGCATACCAGCCAAGAATGTTGTTGTTGACTTTGGTGAACAAATAGTATGTTTTACCATCTTATCCTGTTGAGATAATTTTATTCAAAAGATTGGATGACAAAGTACTCATTTTTTGCTTGGTTGCTGCACAGCTTAGTGTTAGCATTGATGTGCCAGGTGAAGAAACTTATTCTTTCCAGCCTAGGTTGTTTGGCAAGGTGAGGCTAAGCTTAAAATATGGCTGTGATATTTTTGGACGGAGCTCCATTTAAAATTTCTGAAATTGTTCCCCGAGTAACTGAAGATGCTTACTCTGTGATCTCGTGCTGGTCCTCTCATGATTGGCAGATAACACCTGCAAAATGCAGATACGAAGTGATGTCTACCAAAATTGAGATCCGCCTTGCGAAAGCTGAGCTGTTACACTGGACATCGCTTGAGTATACAACGGAACCTGTTGTAATTCAGAGGCCTATTGTGTCATCAGGTAAACCTGTTTGCTAGTCTAATATGTTATTCTGGCTATCAATGGGGTTCCTCTCCCCCTTCACGCAATTGTCAGTTCAATAGTTTCTTCATGTTTACTTAAATGGAGTCGCTTACAAGGACCAATGAATTTTGTACCAAATCTGATGTTTAATTATTTAGCAGCAGAACTTACTATTAGTTTTGCATTTTACAGCTGCCCCGCGGCCCAGTTATCCTTCCTCAAAACTGAGAAATGTAGATTGGGATAAACTAGAAGCTGAAGTGAAAAAAGAGGTATTTAGAACATTACAGTGTTGTGTTTGATGTCCTTGTCTAAAGATCACGATAGACTCTGCAGTTTAGTTTCTTTGTCCCTGAATGCTTGGAATGTGTTCCAGGAAAAAGATGAAAAATTGGATGGAGATGCAGCATTGAACAAATTTTTCAGAGACATTTACCAAGATGCTGACGAGGACACTAGAAGAGCTATGATGAAATCCTTTGTAAGCCTGATCCTTTCTATATATTATATATTTCAAAAAAGGAATACCTCTAACAGTCCTCGTGGAGGACATTAGTTTCTCCATTATGATGGGACATAATCTTCCTAGGCCAGTGCTTTGGGGCTAGTACTAGATGCACTTAGCTTTCTCTCTGTTGCATTTTCCTTTGGGAAGATGCCTACCAACCTATAATATTGTCGTCTTCTTATTCCTTCTTTAAATATCTTAAAACATCTCACAACACTTCCTTATCCTTGTGCACCATTTGTCATGTTTAAGAAGTTGTCTTTCTCAACTCTGTAGCTTATTTCAAGTTTTCTTGTAAAGGGTGCCTGTCAGATTTAGGTTGTTATCCTCTGACTGATGAACTTTGTAAGCTTGGTAATTTGTTGCATTTCTTCCTTGCGGATGACAGAAGTCTTATGTGGTGTAATATGTTATTTTTATATGTGCTGCCTGTCAGGTGGAATCTAATGGGACTGTTTTGTCGACAAACTGGAAAGAAGTTGGCACAAAGAAGGTTGAAGGAAGCCCTCCGGATGGCATGGAGCTGAAGAAATGGGAGATCTAGAATCGATCCTCTGTTGATGTTTTTTGACTTTGCATTTTAAGTTGTTTCATTGCTATTTTTATTATAGAAGAATTTGTTCATATTTTCTTTTCTAAGGTTTTAAGTTTTGTTCTTTGCTGTTGGATTGAGATAACAGTAATATATCTTCAAATTGTGGACAGCTTATCTTTTCAAGATCTTGTTAGAATTTCATTTTTG
TATATATAAAGAGCCGAAATAATCCAAGGTCTCTGTAGTCTCAAAAAAATCCATTCCAATTGCCATTTCACTCTTGTTCTAGATACTTCTTTGGAGTTCCTCTCCATCACCAATGGCGTCCGATCTGGAGACTAGGGCTAAAGAGGCATTCATTGACGACCACTTTGAACTCGCCGTTGACCTGTACACTCAAGCCATAACGCTGAGCCCTAAGAACCCTGAACTTTTCGCCGACCGTGCTCAGGCCAATATCAAACTCAACTACTTCACTGGTATCATCCTTTCTAAACCTAATTTATCCGTTAATTTCATTATTTGTAAGAAACGGCGTTGATTCTATTATTTTGCTATGTTATTTGTGTTCTGCGATTTATAGAATTGGTTGAAGGTTTTGTGGATTTGTGCTTCGTTTTGTGTTTTCGGCGTATTTGTTTCTCTGCTTGATTACGAAAGTTAATTACCGCTATCTGCTACTTGACTGCGTGGGGTTTATGGTGAAGAGTTTGTTAAGCCTTTTTTTGGATTACGGTTTTAATGTGTTGTTGTTACGCTTTTATTAGATCCGGTGTTTGTTTTATTGGTTAAGTGTTAGATTTAGAGAATCTTGGGAATCCTAATTTGACTTATAAGTTTAATTGGTTGTTTAGTCTTGGAATGAGATGAACAGGGAGGATTCACAAAGTCAAACTCTATTGTCTCTTTTTTTGGTAACAGTAAAAGCCGTGGTTGTTGAAATTTTTCTCCTGTGTTATATCTCGTTAGCTTTCTTATGTTCTATGAGATTGAATGAGGTTCATAGGCATTGCATCCTGCAAAGATATCTGTATATGTATGCATCAACGTCTTGTATTTTCTGAATACTACTTGTATGTATCTGCATACATCATCATATTTCACTATTTATGGTGTTAATAATTATCATTCTAAACGGGGTAGCAATTTTAATAATGTTTACATGTGAGCAGAAGCTGTTGTTGATGCGAACAAGGCCATTGAGTTGGATCCTACAATGTCAAAAGCATATTTACGCAAGGGGTGAGTATATAATTACTTTCTTATTCCTGTGCGTAAATCTTGTTTAGATTTTGTGGAGTTTTATTACTTTTTCACTACATGTTTTTGTTGCTCTCATATCATGTGCTATGGTATTGTTGTCTTGATCTAACAACGTTCACCTGAAAACTGACATGGTGATTTAGCTCTTGTGATTTGGGATGTTGCAATAGGTGATGGTGAAATCTAGATTTGTCATTTTCATGATTTATTGGTTTGTTGAATATGTCTGGTTTTCATCATCCTCCAAGAAAGACTCTGCAGCATCATAAATTTTTCCACCACCTCTCGACTGTAATTCCCCAAAAATGTTACTACAGTACCATGTAATTATTAAGTATTTTATAATATACTTTCCATTGTTTTTGCTAGTCCAGTATACTAAAAGTATTTCTCTCCTTGTCCATTTTAGCAAATCAAAGGAGATTTATAACTTTCTTCCGATGCTCTCTTTATCATTATGTACCCACACTTTCCAATCATTGCTTTATTGATAGAACTTTAATAACCATTAATAGGGATAATTTAAATAAACAAACTCTTAACGAATAATTATCAAGGGAAATGTAAAGTCAATACTGGACTGGTGGAAAGCAATGGAGGGAGAATTTTGTTTAGGTTTTACCTGCACTTTTGATAATCAACAAAGACTAAGTGAAACAACACTATTTTTTGCAGTAGCACTTGCTATCTGTCACTTCTTGTTTTACTAGATACTGCATTGTTGAATTAATTTTTTTTTTGTTACTTTTCTAGGTTGGCCTGTATGAAGCTTGAAGAATACCAAACTGCAAAGGCAGCTTTGGAAATTGGTGCCAGTTTAGCACCAGGAGAGTTAAGATTCAGTAAGCTAATGAAAGAATGTGATGAACATATTGCAGGTAAAGTAGCGCTTTTGTGGCTATTCTAACATTTCCCAAATCTGTTCAATTCTAACATAAACTCATGGCATCTTTGGAGACTTTGGTATTATATAGGTAAATTAGTGCTTTTGTGGCTCTTCTAACATTTCCCAAATCTGGTCAGTTCTAACATCAACTCATGGCATCTATGGAGACTTGGTGATGATATGAGAAATTGGCAGTTTATAGTTTAAGAAAATACCAAAAGCCACGTTTTTTTTTTTTAATGATTGTGGTTATTTTCCTGACAGATTTATGTGTATATTTCACTATGCTATTAGCAACATTAAGTGCTTAGTGAAACTAATCGATGGTCTTTTGCTCCAAATTCAGAGGAAGCTGGCGAATTGCCTAATCTGTCGGTGGATAAAACCTCAGCTAGTGTTGTTGCACATCCTGCATCTGAGTTACCGGACAATGTTGCTATTGCGCCTGAAGGTGCTCAACCAACGGTCAACCAGTCCCATCAAGGATCTGCTGCCAAACCAAAATACAGGTTTTATGCCAAAGCTTTTGCTGTGTTAGTGAGTCGTTTAAGTCCAGTAACTCTGAGATAGTACCTTTTGATAGGGTAAATAATCTTATCAATGTGGGGATACTTGTGAAATTGTAATAACAAAGTACTACTACAGTCAAACCTAGTGTCAGACACATTTGATGTTTAGATCTCATTTTGCTGTTATAAACAAAAGTACACAAAAAATTAGTTAATGGTATTGTGTACAGAGAAGAATGAATGTATTTCTCAACCAATTTAACCAATTTTTTTTGTATGAATGTAAAGAAGGTGAACATCTCGTGAAGTTATGACCATAATTGATTGGCACTATTTAAATACAATTTTTTTCTTTCTTGGAGAACATGGGCTAATCTGATGTATGTAATTGCAGACATGAATTTTATCAGAAACCAGAGGAGGTGGTGGTGACTATATTTGCCAAGGGCATACCAGCCAAGAATGTTGTTGTTGACTTTGGTGAACAAATAGTATGTTTTACCATCTTATCCTGTTGAGATAATTTTATTCAAAAGATTGGATGACAAAGTACTCATTTTTTGCTTGGTTGCTGCACAGCTTAGTGTTAGCATTGATGTGCCAGGTGAAGAAACTTATTCTTTCCAGCCTAGGTTGTTTGGCAAGGTGAGGCTAAGCTTAAAATATGGCTGTGATATTTTTGGACGGAGCTCCATTTAAAATTTCTGAAATTGTTCCCCGAGTAACTGAAGATGCTTACTCTGTGATCTCGTGCTGGTCCTCTCATGATTGGCAGATAACACCTGCAAAATGCAGATACGAAGTGATGTCTACCAAAATTGAGATCCGCCTTGCGAAAGCTGAGCTGTTACACTGGACATCGCTTGAGTATACAACGGAACCTGTTGTAATTCAGAGGCCTATTGTGTCATCAGGTAAACCTGTTTGCTAGTCTAATATGTTATTCTGGCTATCAATGGGGTTCCTCTCCCCCTTCACGCAATTGTCAGTTCAATAGTTTCTTCATGTTTACTTAAATGGAGTCGCTTACAAGGACCAATGAATTTTGTACCAAATCTGATGTTTAATTATTTAGCAGCAGAACTTACTATTAGTTTTGCATTTTACAGCTGCCCCGCGGCCCAGTTATCCTTCCTCAAAACTGAGAAATGTAGATTGGGATAAACTAGAAGCTGAAGTGAAAAAAGAGGTATTTAGAACATTACAGTGTTGTGTTTGATGTCCTTGTCTAAAGATCACGATAGACTCTGCAGTTTAGTTTCTTTGTCCCTGAATGCTTGGAATGTGTTCCAGGAAAAAGATGAAAAATTGGATGGAGATGCAGCATTGAACAAATTTTTCAGAGACATTTACCAAGATGCTGACGAGGACACTAGAAGAGCTATGATGAAATCCTTTGTAAGCCTGATCCTTTCTATATATTATATATTTCAAAAAAGGAATACCTCTAACAGTCCTCGTGGAGGACATTAGTTTCTCCATTATGATGGGACATAATCTTCCTAGGCCAGTGCTTTGGGGCTAGTACTAGATGCACTTAGCTTTCTCTCTGTTGCATTTTCCTTTGGGAAGATGCCTACCAACCTATAATATTGTCGTCTTCTTATTCCTTCTTTAAATATCTTAAAACATCTCACAACACTTCCTTATCCTTGTGCACCATTTGTCATGTTTAAGAAGTTGTCTTTCTCAACTCTGTAGCTTATTTCAAGTTTTCTTGTAAAGGGTGCCTGTCAGATTTAGGTTGTTATCCTCTGACTGATGAACTTTGTAAGCTTGGTAATTTGTTGCATTTCTTCCTTGCGGATGACAGAAGTCTTATGTGGTGTAATATGTTATTTTTATATGTGCTGCCTGTCAGGTGGAATCTAATGGGACTGTTTTGTCGACAAACTGGAAAGAAGTTGGCACAAAGAAGGTTGAAGGAAGCCCTCCGGATGGCATGGAGCTGAAGAAATGGGAGATCTAGAATCGATCCTCTGTTGATGTTTTTTGACTTTGCATTTTAAGTTGTTTCATTGCTATTTTTATTATAGAAGAATTTGTTCATATTTTCTTTTCTAAGGTTTTAAGTTTTGTTCTTTGCTGTTGGATTGAGATAACAGTAATATATCTTCAAATTGTGGACAGCTTATCTTTTCAAGATCTTGTTAGAATTTCATTTTTG
| Download sequence region |
Get flanking sequences on SL2.50ch03
|
mRNA Solyc03g007670.2.1
mRNA Solyc03g007670.2.1
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Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc03g007670.2.1 SGT1 (AHRD V1 **-- Q2HPC2_SOLTU); contains Interpro domain(s) IPR007699 SGS
TATATATAAAGAGCCGAAATAATCCAAGGTCTCTGTAGTCTCAAAAAAATCCATTCCAATTGCCATTTCACTCTTGTTCTAGATACTTCTTTGGAGTTCCTCTCCATCACCAATGGCGTCCGATCTGGAGACTAGGGCTAAAGAGGCATTCATTGACGACCACTTTGAACTCGCCGTTGACCTGTACACTCAAGCCATAACGCTGAGCCCTAAGAACCCTGAACTTTTCGCCGACCGTGCTCAGGCCAATATCAAACTCAACTACTTCACTGAAGCTGTTGTTGATGCGAACAAGGCCATTGAGTTGGATCCTACAATGTCAAAAGCATATTTACGCAAGGGGTTGGCCTGTATGAAGCTTGAAGAATACCAAACTGCAAAGGCAGCTTTGGAAATTGGTGCCAGTTTAGCACCAGGAGAGTTAAGATTCAGTAAGCTAATGAAAGAATGTGATGAACATATTGCAGAGGAAGCTGGCGAATTGCCTAATCTGTCGGTGGATAAAACCTCAGCTAGTGTTGTTGCACATCCTGCATCTGAGTTACCGGACAATGTTGCTATTGCGCCTGAAGGTGCTCAACCAACGGTCAACCAGTCCCATCAAGGATCTGCTGCCAAACCAAAATACAGACATGAATTTTATCAGAAACCAGAGGAGGTGGTGGTGACTATATTTGCCAAGGGCATACCAGCCAAGAATGTTGTTGTTGACTTTGGTGAACAAATACTTAGTGTTAGCATTGATGTGCCAGGTGAAGAAACTTATTCTTTCCAGCCTAGGTTGTTTGGCAAGATAACACCTGCAAAATGCAGATACGAAGTGATGTCTACCAAAATTGAGATCCGCCTTGCGAAAGCTGAGCTGTTACACTGGACATCGCTTGAGTATACAACGGAACCTGTTGTAATTCAGAGGCCTATTGTGTCATCAGCTGCCCCGCGGCCCAGTTATCCTTCCTCAAAACTGAGAAATGTAGATTGGGATAAACTAGAAGCTGAAGTGAAAAAAGAGGAAAAAGATGAAAAATTGGATGGAGATGCAGCATTGAACAAATTTTTCAGAGACATTTACCAAGATGCTGACGAGGACACTAGAAGAGCTATGATGAAATCCTTTGTGGAATCTAATGGGACTGTTTTGTCGACAAACTGGAAAGAAGTTGGCACAAAGAAGGTTGAAGGAAGCCCTCCGGATGGCATGGAGCTGAAGAAATGGGAGATCTAGAATCGATCCTCTGTTGATGTTTTTTGACTTTGCATTTTAAGTTGTTTCATTGCTATTTTTATTATAGAAGAATTTGTTCATATTTTCTTTTCTAAGGTTTTAAGTTTTGTTCTTTGCTGTTGGATTGAGATAACAGTAATATATCTTCAAATTGTGGACAGCTTATCTTTTCAAGATCTTGTTAGAATTTCATTTTTG
TATATATAAAGAGCCGAAATAATCCAAGGTCTCTGTAGTCTCAAAAAAATCCATTCCAATTGCCATTTCACTCTTGTTCTAGATACTTCTTTGGAGTTCCTCTCCATCACCAATGGCGTCCGATCTGGAGACTAGGGCTAAAGAGGCATTCATTGACGACCACTTTGAACTCGCCGTTGACCTGTACACTCAAGCCATAACGCTGAGCCCTAAGAACCCTGAACTTTTCGCCGACCGTGCTCAGGCCAATATCAAACTCAACTACTTCACTGAAGCTGTTGTTGATGCGAACAAGGCCATTGAGTTGGATCCTACAATGTCAAAAGCATATTTACGCAAGGGGTTGGCCTGTATGAAGCTTGAAGAATACCAAACTGCAAAGGCAGCTTTGGAAATTGGTGCCAGTTTAGCACCAGGAGAGTTAAGATTCAGTAAGCTAATGAAAGAATGTGATGAACATATTGCAGAGGAAGCTGGCGAATTGCCTAATCTGTCGGTGGATAAAACCTCAGCTAGTGTTGTTGCACATCCTGCATCTGAGTTACCGGACAATGTTGCTATTGCGCCTGAAGGTGCTCAACCAACGGTCAACCAGTCCCATCAAGGATCTGCTGCCAAACCAAAATACAGACATGAATTTTATCAGAAACCAGAGGAGGTGGTGGTGACTATATTTGCCAAGGGCATACCAGCCAAGAATGTTGTTGTTGACTTTGGTGAACAAATACTTAGTGTTAGCATTGATGTGCCAGGTGAAGAAACTTATTCTTTCCAGCCTAGGTTGTTTGGCAAGATAACACCTGCAAAATGCAGATACGAAGTGATGTCTACCAAAATTGAGATCCGCCTTGCGAAAGCTGAGCTGTTACACTGGACATCGCTTGAGTATACAACGGAACCTGTTGTAATTCAGAGGCCTATTGTGTCATCAGCTGCCCCGCGGCCCAGTTATCCTTCCTCAAAACTGAGAAATGTAGATTGGGATAAACTAGAAGCTGAAGTGAAAAAAGAGGAAAAAGATGAAAAATTGGATGGAGATGCAGCATTGAACAAATTTTTCAGAGACATTTACCAAGATGCTGACGAGGACACTAGAAGAGCTATGATGAAATCCTTTGTGGAATCTAATGGGACTGTTTTGTCGACAAACTGGAAAGAAGTTGGCACAAAGAAGGTTGAAGGAAGCCCTCCGGATGGCATGGAGCTGAAGAAATGGGAGATCTAGAATCGATCCTCTGTTGATGTTTTTTGACTTTGCATTTTAAGTTGTTTCATTGCTATTTTTATTATAGAAGAATTTGTTCATATTTTCTTTTCTAAGGTTTTAAGTTTTGTTCTTTGCTGTTGGATTGAGATAACAGTAATATATCTTCAAATTGTGGACAGCTTATCTTTTCAAGATCTTGTTAGAATTTCATTTTTG
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc03g007670.2.1 SGT1 (AHRD V1 **-- Q2HPC2_SOLTU); contains Interpro domain(s) IPR007699 SGS
MASDLETRAKEAFIDDHFELAVDLYTQAITLSPKNPELFADRAQANIKLNYFTEAVVDANKAIELDPTMSKAYLRKGLACMKLEEYQTAKAALEIGASLAPGELRFSKLMKECDEHIAEEAGELPNLSVDKTSASVVAHPASELPDNVAIAPEGAQPTVNQSHQGSAAKPKYRHEFYQKPEEVVVTIFAKGIPAKNVVVDFGEQILSVSIDVPGEETYSFQPRLFGKITPAKCRYEVMSTKIEIRLAKAELLHWTSLEYTTEPVVIQRPIVSSAAPRPSYPSSKLRNVDWDKLEAEVKKEEKDEKLDGDAALNKFFRDIYQDADEDTRRAMMKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEI*
MASDLETRAKEAFIDDHFELAVDLYTQAITLSPKNPELFADRAQANIKLNYFTEAVVDANKAIELDPTMSKAYLRKGLACMKLEEYQTAKAALEIGASLAPGELRFSKLMKECDEHIAEEAGELPNLSVDKTSASVVAHPASELPDNVAIAPEGAQPTVNQSHQGSAAKPKYRHEFYQKPEEVVVTIFAKGIPAKNVVVDFGEQILSVSIDVPGEETYSFQPRLFGKITPAKCRYEVMSTKIEIRLAKAELLHWTSLEYTTEPVVIQRPIVSSAAPRPSYPSSKLRNVDWDKLEAEVKKEEKDEKLDGDAALNKFFRDIYQDADEDTRRAMMKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEI*
Gene model matches
Gene model matches
|
SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
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GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
| Other genome matches | None |
Literature annotations [1]
Literature annotations [1]
| [Associate publication] [Matching publications] |
The MI-1-mediated pest resistance requires Hsp90 and Sgt1.
Plant physiology (2007)
Show / hide abstract
Show / hide abstract
The tomato (Solanum lycopersicum) Mi-1 gene encodes a protein with putative coiled-coil nucleotide-binding site and leucine-rich repeat motifs. Mi-1 confers resistance to root-knot nematodes (Meloidogyne spp.), potato aphids (Macrosiphum euphorbiae), and sweet potato whitefly (Bemisia tabaci). To identify genes required in the Mi-1-mediated resistance to nematodes and aphids, we used tobacco rattle virus (TRV)-based virus-induced gene silencing (VIGS) to repress candidate genes and assay for nematode and aphid resistance. We targeted Sgt1 (suppressor of G-two allele of Skp1), Rar1 (required for Mla12 resistance), and Hsp90 (heat shock protein 90), which are known to participate early in resistance gene signaling pathways. Two Arabidopsis (Arabidopsis thaliana) Sgt1 genes exist and one has been implicated in disease resistance. Thus far the sequence of only one Sgt1 ortholog is known in tomato. To design gene-specific VIGS constructs, we cloned a second tomato Sgt1 gene, Sgt1-2. The gene-specific VIGS construct TRV-SlSgt1-1 resulted in lethality, while silencing Sgt1-2 using TRV-SlSgt1-2 did not result in lethal phenotype. Aphid and root-knot nematode assays of Sgt1-2-silenced plants indicated no role for Sgt1-2 in Mi-1-mediated resistance. A Nicotiana benthamiana Sgt1 VIGS construct silencing both Sgt1-1 and Sgt1-2 yielded live plants and identified a role for Sgt1 in Mi-1-mediated aphid resistance. Silencing of Rar1 did not affect Mi-1-mediated nematode and aphid resistance and demonstrated that Rar1 is not required for Mi-1 resistance. Silencing Hsp90-1 resulted in attenuation of Mi-1-mediated aphid and nematode resistance and indicated a role for Hsp90-1. The requirement for Sgt1 and Hsp90-1 in Mi-1-mediated resistance provides further evidence for common components in early resistance gene defense signaling against diverse pathogens and pests.
Bhattarai, Kishor. Li, Qi. Liu, Yule. Dinesh-Kumar, Savithramma. Kaloshian, Isgouhi.
Plant physiology.
2007.
144(1).
312-23.
Ontology annotations (5)
Ontology annotations (5)
| [Add ontology annotations] |
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