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Tomato locus arginine decarboxylase
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases
Links to external databases
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arginine decarboxylase is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch01, position: 97147393
Please cite Razifard et al.
| Registry name: | None | [Associate registry name] |
Notes and figures (0)
Notes and figures (0)
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Accessions and images (0)
| [Associate accession] |
Accession name:
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| Alleles (0) | None | [Add new Allele] |
Associated loci (1)
Associated loci (1)
| [Associate new locus] |
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Associated loci - graphical view
Associated loci - graphical view
| View arginine decarboxylase relationships in the stand-alone network browser |
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SolCyc links
SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc01g110440.2 SL2.50ch01:97145565..97149122
ATAAAATCAGAAATCGAATCGATAACCTAATAAAAAAGTTTGTGAAACCTTTAAAAAACAGTTAACCCAATAACGTTCCAGCTAATCAAGTTCATTCCAGCTCCCTATGAGCTCATAGTCGCTGGAAGGAATAAAAGCTTGTTCCATCAATATCAATAAACCAATAATATTTCTCGATTCGATTCATTGGTTAAATAGATTTTTGCATACACATACATATATTCGAAAGATGAAGCTTGAAAGTCAAAGAAAAAAATTTTAATTTCTGAAAAGAAAAATCACTTTATTGTTGCTCAAAAATAATGATTTTTAAAAACTTTTTTAAAAGTTGTTAGATTACTTTTAGTTAAAAAGTTGTTAAAAAAGTGCTTTCTTCCTTAAATTAAGTATTTTACCTACAATCCTCAATAAATATCGATCATACTTCTTCAATTCGTCGGATACATGTATCAAACTTATGAAATATCATATAAAATAATATTCGAAATAATCGTAAATGTTAGTAATAATTAGAATCTAAACTAGCTTTATTTGCGCAATTTAACCTAATTTAGAATTCCTACTCCAAGAAGAAGAAGCATAAGAGAAAGTGAGAGAGTTTCGATGGGCCGAAAAATGGGGCCCACGGCCCAGCCACGGATTTTAGCCCTATATAAAGCGTCTTCGTCTCATGCAAATCTCGCTCACTTCATAAGCTGTTAGTTTCACGTTCTCTTCGCAATTTCCATTACAGCCGCTAGGTTTCCGTCCACTTCTTCTTCTCCATTAATATCTGTATGGTGTTCTTCTTTTTTGAATTCTAGATTTTTTCTTTGAATTCTTGTTAATCTTTAATTTTCTTTGTTTAAATCAAGAAATTAGCTTCTTCTGAAGTCAGGGTGGGGATTTTTGGATCGTGTCAAAGTGTGTTAGAGGGTGATTATCTTTTGATTCACTTGTTTTTTTGCTTCTTTTGAGGGGGTAGCCGGGGCCTCGGCCTCGGCGGGTTTTAATAGCCCCCAACTATTACAACATTGGGAAGAAGAACATCAATCTGTACAAACCCTTAAGTTAGTTTTTCTTTTTAATTCTTTGATTCTTTCTTCTTAACAAATCAAAACAGATCGGGGAAGAGATGCCGGCCTTAGGTTGTTGTGTAGACGCTTCTGTTTCCCCTCCTCTCGGCTATGCCTTTTCTTGGGATAGCTCTCTTCCCGCGCCGGAGTTGTTTTCCTCCGGCGTACCTCCGGCGACAAACGCCGCCGCCGTTTCCACCGGTTCTCATTGGTCTACGGATCTGTCATCTGATTTGTACCGGGTAGATGGGTGGGGTGCTCCTTATTTCTCCGTGAACTCTTCCGGGGATATTTCCGTCCGTCCACATGGTACGGATACTCTTCCTCACCAGGAGATTGACCTTCTTAAGGTTGTGAAGAAGGCTTCTGACCCGAAAAATTTGGGTGGACTTGGGCTCCAGATGCCTCTTGTTGTCCGTTTTCCTGATGTTCTGAAGAACCGTTTGGAGACTCTGCAATCGGCTTTTGACATGGCGATTAATTCTCAAGGCTATGAGGCTCACTATCAAGGTGTTTATCCGGTGAAATGCAATCAAGATAGGTTCGTGGTGGAGGATATCGTGAAATTCGGGTCGCCATACCGATTCGGGCTGGAAGCCGGGTCTAAACCGGAGCTCCTGTTGGCGATGAACTGTCTGTCAAAGGGCAGTGCTGATGCTCTTCTTGTTTGCAATGGTTTCAAGGACACTGAGTATATTTCGCTTGCTTTGGTCGCAAGAAAGCTCCTTTTGAACAGTGTGATTGTGCTTGAACAAGAGGAGGAGCTTGACCTGGTGATTGATATCAGCCGTAAGATGTCTGTCCGGCCTGTAATTGGACTTCGTGCTAAGCTCAGGACAAAGCATTCTGGCCATTTTGGATCCACTTCTGGTGAAAAGGGTAAGTTTGGGTTGACAACAACCCAGATTCTTCGTGTAGTGAAGAAGCTTGATGAATCTGGAATGCTGGATTGTCTCCAGTTATTGCATTTTCACATTGGATCTCAGATCCCCACAACAGAGTTGCTTGCTGATGGTGTTGGTGAGGCCACTCAGATTTACTCTGAATTAGTCCGTCTTGGAGCTGGTATGAAATTCATTGATATCGGAGGGGGGCTTGGAATCGACTATGACGGTTCTAAATCAAGCAATTCTGATGTCTCTGTTTGCTATAGCATTGAAGAATATGCCTCTGCTGTTGTCCAAGCGGTCCTCTATGTCTGTGATCGTAAGGGCGTAAAGCATCCAGTGATTTGCAGCGAAAGTGGCAGGGCAATTGTTTCTCACCATTCAATTCTGATTTTTGAAGCCGTGTCTGCTTCTACTAGTCATGTTTCTACACAGCCATCTTCGGGTGGTTTACAATCCTTGGTGGAGACTCTCAATGAAGATGCCCGTGCTGACTACAGAAACTTATCTGCTGCTGCTGTCCGTGGAGAATATGATACATGTCTCATCTATTCTGATCAGTTGAAACAGAGATGTGTTGAACAGTTCAAAGATGGGTCCTTGGATATTGAGCAGCTCGCTGCAGTGGATAGCATTTGTGATTGGGTGTCGAAGGCTATCGGGGTTGCTGATCCTGTCCGCACTTACCATGTGAATCTGTCAGTTTTCACCTCAATCCCTGATTTTTGGGGCTTCAGCCAATTGTTTCCTATTGTTCCAATTCACCGTCTGGATGAAAAGCCTACAATGAGAGGAATACTGTCTGACCTGACGTGTGACAGTGATGGAAAGGTTGATAAGTTCATTGGGGGCGAATCAAGCTTGCCGCTCCATGAAATTGGAAGTGGTGATGGTGGGCGGTATTATCTGGGGATGTTTTTGGGTGGGGCTTATGAGGAGGCGCTCGGAGGACTCCACAATCTATTTGGTGGACCAAGCGTTGTTCGGGTGATGCAGAGCGATAGCCCTCACAGCTTTGCGGTGACTCGCTCTGTCCCTGGTCCATCGTGTGCTGATGTGCTCCGGGCGATGCAGTTTGAGCCTGAACTCATGTTCGAGACTCTCAAGCACCGTGCAGAGGAATTCTTGGAACAAGGAGAAGGAGAAGGCGAAGGTGTTGCCTTTGGATCTTTGACCAGCAGCTTAGCTCAGTCCTTCCACAACATGCCTTACCTTTCGTCTTGCTGCTTCACTGCAGAAGCCACTGCCAATGCCAATACCAATACCAATAATGGTGGCTATTACTATTACAGTGAAGACAATGCTGCAGCAGAGGAAGATGAGATTTGGTCCTACTAAACTCTGCTTGAAGTGTCTCTTGTTAGCATCTCCAGTTTGTTTTAGTTTGTGGTCGAGGTCGTCTGTTTTTTTATAATAATCCCACCCCTTAGTTTGGGTGCATGTTAATTACTTTTGTTTGCAATAGATGCAGTAGACTGTCATCTCCTATTGCAACTAAGCTTATGTTATGACCGCAATCAGTTTTATATTAATGCTGTCTTTTTTTGTTTCAAGTATTGAATCGCCTCCTTATGTTTGATGATGGTGTTAATTGAATCGCCTCCTTACGGGGGTAG
ATAAAATCAGAAATCGAATCGATAACCTAATAAAAAAGTTTGTGAAACCTTTAAAAAACAGTTAACCCAATAACGTTCCAGCTAATCAAGTTCATTCCAGCTCCCTATGAGCTCATAGTCGCTGGAAGGAATAAAAGCTTGTTCCATCAATATCAATAAACCAATAATATTTCTCGATTCGATTCATTGGTTAAATAGATTTTTGCATACACATACATATATTCGAAAGATGAAGCTTGAAAGTCAAAGAAAAAAATTTTAATTTCTGAAAAGAAAAATCACTTTATTGTTGCTCAAAAATAATGATTTTTAAAAACTTTTTTAAAAGTTGTTAGATTACTTTTAGTTAAAAAGTTGTTAAAAAAGTGCTTTCTTCCTTAAATTAAGTATTTTACCTACAATCCTCAATAAATATCGATCATACTTCTTCAATTCGTCGGATACATGTATCAAACTTATGAAATATCATATAAAATAATATTCGAAATAATCGTAAATGTTAGTAATAATTAGAATCTAAACTAGCTTTATTTGCGCAATTTAACCTAATTTAGAATTCCTACTCCAAGAAGAAGAAGCATAAGAGAAAGTGAGAGAGTTTCGATGGGCCGAAAAATGGGGCCCACGGCCCAGCCACGGATTTTAGCCCTATATAAAGCGTCTTCGTCTCATGCAAATCTCGCTCACTTCATAAGCTGTTAGTTTCACGTTCTCTTCGCAATTTCCATTACAGCCGCTAGGTTTCCGTCCACTTCTTCTTCTCCATTAATATCTGTATGGTGTTCTTCTTTTTTGAATTCTAGATTTTTTCTTTGAATTCTTGTTAATCTTTAATTTTCTTTGTTTAAATCAAGAAATTAGCTTCTTCTGAAGTCAGGGTGGGGATTTTTGGATCGTGTCAAAGTGTGTTAGAGGGTGATTATCTTTTGATTCACTTGTTTTTTTGCTTCTTTTGAGGGGGTAGCCGGGGCCTCGGCCTCGGCGGGTTTTAATAGCCCCCAACTATTACAACATTGGGAAGAAGAACATCAATCTGTACAAACCCTTAAGTTAGTTTTTCTTTTTAATTCTTTGATTCTTTCTTCTTAACAAATCAAAACAGATCGGGGAAGAGATGCCGGCCTTAGGTTGTTGTGTAGACGCTTCTGTTTCCCCTCCTCTCGGCTATGCCTTTTCTTGGGATAGCTCTCTTCCCGCGCCGGAGTTGTTTTCCTCCGGCGTACCTCCGGCGACAAACGCCGCCGCCGTTTCCACCGGTTCTCATTGGTCTACGGATCTGTCATCTGATTTGTACCGGGTAGATGGGTGGGGTGCTCCTTATTTCTCCGTGAACTCTTCCGGGGATATTTCCGTCCGTCCACATGGTACGGATACTCTTCCTCACCAGGAGATTGACCTTCTTAAGGTTGTGAAGAAGGCTTCTGACCCGAAAAATTTGGGTGGACTTGGGCTCCAGATGCCTCTTGTTGTCCGTTTTCCTGATGTTCTGAAGAACCGTTTGGAGACTCTGCAATCGGCTTTTGACATGGCGATTAATTCTCAAGGCTATGAGGCTCACTATCAAGGTGTTTATCCGGTGAAATGCAATCAAGATAGGTTCGTGGTGGAGGATATCGTGAAATTCGGGTCGCCATACCGATTCGGGCTGGAAGCCGGGTCTAAACCGGAGCTCCTGTTGGCGATGAACTGTCTGTCAAAGGGCAGTGCTGATGCTCTTCTTGTTTGCAATGGTTTCAAGGACACTGAGTATATTTCGCTTGCTTTGGTCGCAAGAAAGCTCCTTTTGAACAGTGTGATTGTGCTTGAACAAGAGGAGGAGCTTGACCTGGTGATTGATATCAGCCGTAAGATGTCTGTCCGGCCTGTAATTGGACTTCGTGCTAAGCTCAGGACAAAGCATTCTGGCCATTTTGGATCCACTTCTGGTGAAAAGGGTAAGTTTGGGTTGACAACAACCCAGATTCTTCGTGTAGTGAAGAAGCTTGATGAATCTGGAATGCTGGATTGTCTCCAGTTATTGCATTTTCACATTGGATCTCAGATCCCCACAACAGAGTTGCTTGCTGATGGTGTTGGTGAGGCCACTCAGATTTACTCTGAATTAGTCCGTCTTGGAGCTGGTATGAAATTCATTGATATCGGAGGGGGGCTTGGAATCGACTATGACGGTTCTAAATCAAGCAATTCTGATGTCTCTGTTTGCTATAGCATTGAAGAATATGCCTCTGCTGTTGTCCAAGCGGTCCTCTATGTCTGTGATCGTAAGGGCGTAAAGCATCCAGTGATTTGCAGCGAAAGTGGCAGGGCAATTGTTTCTCACCATTCAATTCTGATTTTTGAAGCCGTGTCTGCTTCTACTAGTCATGTTTCTACACAGCCATCTTCGGGTGGTTTACAATCCTTGGTGGAGACTCTCAATGAAGATGCCCGTGCTGACTACAGAAACTTATCTGCTGCTGCTGTCCGTGGAGAATATGATACATGTCTCATCTATTCTGATCAGTTGAAACAGAGATGTGTTGAACAGTTCAAAGATGGGTCCTTGGATATTGAGCAGCTCGCTGCAGTGGATAGCATTTGTGATTGGGTGTCGAAGGCTATCGGGGTTGCTGATCCTGTCCGCACTTACCATGTGAATCTGTCAGTTTTCACCTCAATCCCTGATTTTTGGGGCTTCAGCCAATTGTTTCCTATTGTTCCAATTCACCGTCTGGATGAAAAGCCTACAATGAGAGGAATACTGTCTGACCTGACGTGTGACAGTGATGGAAAGGTTGATAAGTTCATTGGGGGCGAATCAAGCTTGCCGCTCCATGAAATTGGAAGTGGTGATGGTGGGCGGTATTATCTGGGGATGTTTTTGGGTGGGGCTTATGAGGAGGCGCTCGGAGGACTCCACAATCTATTTGGTGGACCAAGCGTTGTTCGGGTGATGCAGAGCGATAGCCCTCACAGCTTTGCGGTGACTCGCTCTGTCCCTGGTCCATCGTGTGCTGATGTGCTCCGGGCGATGCAGTTTGAGCCTGAACTCATGTTCGAGACTCTCAAGCACCGTGCAGAGGAATTCTTGGAACAAGGAGAAGGAGAAGGCGAAGGTGTTGCCTTTGGATCTTTGACCAGCAGCTTAGCTCAGTCCTTCCACAACATGCCTTACCTTTCGTCTTGCTGCTTCACTGCAGAAGCCACTGCCAATGCCAATACCAATACCAATAATGGTGGCTATTACTATTACAGTGAAGACAATGCTGCAGCAGAGGAAGATGAGATTTGGTCCTACTAAACTCTGCTTGAAGTGTCTCTTGTTAGCATCTCCAGTTTGTTTTAGTTTGTGGTCGAGGTCGTCTGTTTTTTTATAATAATCCCACCCCTTAGTTTGGGTGCATGTTAATTACTTTTGTTTGCAATAGATGCAGTAGACTGTCATCTCCTATTGCAACTAAGCTTATGTTATGACCGCAATCAGTTTTATATTAATGCTGTCTTTTTTTGTTTCAAGTATTGAATCGCCTCCTTATGTTTGATGATGGTGTTAATTGAATCGCCTCCTTACGGGGGTAG
| Download sequence region |
Get flanking sequences on SL2.50ch01
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mRNA Solyc01g110440.2.1
mRNA Solyc01g110440.2.1
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Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc01g110440.2.1 Arginine decarboxylase (AHRD V1 **** Q9SCF0_DATST); contains Interpro domain(s) IPR002985 Arginine decarboxylase
ATAAAATCAGAAATCGAATCGATAACCTAATAAAAAAGTTTGTGAAACCTTTAAAAAACAGTTAACCCAATAACGTTCCAGCTAATCAAGTTCATTCCAGCTCCCTATGAGCTCATAGTCGCTGGAAGGAATAAAAGCTTGTTCCATCAATATCAATAAACCAATAATATTTCTCGATTCGATTCATTGGTTAAATAGATTTTTGCATACACATACATATATTCGAAAGATGAAGCTTGAAAGTCAAAGAAAAAAATTTTAATTTCTGAAAAGAAAAATCACTTTATTGTTGCTCAAAAATAATGATTTTTAAAAACTTTTTTAAAAGTTGTTAGATTACTTTTAGTTAAAAAGTTGTTAAAAAAGTGCTTTCTTCCTTAAATTAAGTATTTTACCTACAATCCTCAATAAATATCGATCATACTTCTTCAATTCGTCGGATACATGTATCAAACTTATGAAATATCATATAAAATAATATTCGAAATAATCGTAAATGTTAGTAATAATTAGAATCTAAACTAGCTTTATTTGCGCAATTTAACCTAATTTAGAATTCCTACTCCAAGAAGAAGAAGCATAAGAGAAAGTGAGAGAGTTTCGATGGGCCGAAAAATGGGGCCCACGGCCCAGCCACGGATTTTAGCCCTATATAAAGCGTCTTCGTCTCATGCAAATCTCGCTCACTTCATAAGCTGTTAGTTTCACGTTCTCTTCGCAATTTCCATTACAGCCGCTAGGTTTCCGTCCACTTCTTCTTCTCCATTAATATCTGTATGGTGTTCTTCTTTTTTGAATTCTAGATTTTTTCTTTGAATTCTTGTTAATCTTTAATTTTCTTTGTTTAAATCAAGAAATTAGCTTCTTCTGAAGTCAGGGTGGGGATTTTTGGATCGTGTCAAAGTGTGTTAGAGGGTGATTATCTTTTGATTCACTTGTTTTTTTGCTTCTTTTGAGGGGGTAGCCGGGGCCTCGGCCTCGGCGGGTTTTAATAGCCCCCAACTATTACAACATTGGGAAGAAGAACATCAATCTGTACAAACCCTTAAGTTAGTTTTTCTTTTTAATTCTTTGATTCTTTCTTCTTAACAAATCAAAACAGATCGGGGAAGAGATGCCGGCCTTAGGTTGTTGTGTAGACGCTTCTGTTTCCCCTCCTCTCGGCTATGCCTTTTCTTGGGATAGCTCTCTTCCCGCGCCGGAGTTGTTTTCCTCCGGCGTACCTCCGGCGACAAACGCCGCCGCCGTTTCCACCGGTTCTCATTGGTCTACGGATCTGTCATCTGATTTGTACCGGGTAGATGGGTGGGGTGCTCCTTATTTCTCCGTGAACTCTTCCGGGGATATTTCCGTCCGTCCACATGGTACGGATACTCTTCCTCACCAGGAGATTGACCTTCTTAAGGTTGTGAAGAAGGCTTCTGACCCGAAAAATTTGGGTGGACTTGGGCTCCAGATGCCTCTTGTTGTCCGTTTTCCTGATGTTCTGAAGAACCGTTTGGAGACTCTGCAATCGGCTTTTGACATGGCGATTAATTCTCAAGGCTATGAGGCTCACTATCAAGGTGTTTATCCGGTGAAATGCAATCAAGATAGGTTCGTGGTGGAGGATATCGTGAAATTCGGGTCGCCATACCGATTCGGGCTGGAAGCCGGGTCTAAACCGGAGCTCCTGTTGGCGATGAACTGTCTGTCAAAGGGCAGTGCTGATGCTCTTCTTGTTTGCAATGGTTTCAAGGACACTGAGTATATTTCGCTTGCTTTGGTCGCAAGAAAGCTCCTTTTGAACAGTGTGATTGTGCTTGAACAAGAGGAGGAGCTTGACCTGGTGATTGATATCAGCCGTAAGATGTCTGTCCGGCCTGTAATTGGACTTCGTGCTAAGCTCAGGACAAAGCATTCTGGCCATTTTGGATCCACTTCTGGTGAAAAGGGTAAGTTTGGGTTGACAACAACCCAGATTCTTCGTGTAGTGAAGAAGCTtgatgaatcTGGAATGCTGGATTGTCTCCAGTTATTGCATTTTCACATTGGATCTCAGATCCCCACAACAGAGTTGCTTGCTGATGGTGTTGGTGAGGCCACTCAGATTTACTCTGAATTAGTCCGTCTTGGAGCTGGTATGAAATTCATTGATATCGGAGGGGGGCTTGGAATCGACTATGACGGTTCTAAATCAAGCAATTCTGATGTCTCTGTTTGCTATAGCATTGAAGAATATGCCTCTGCTGTTGTCCAAGCGGTCCTCTATGTCTGTGATCGTAAGGGCGTAAAGCATCCAGTGATTTGCAGCGAAAGTGGCAGGGCAATTGTTTCTCACCATTCAATTCTGATTTTTGAAGCCGTGTCTGCTTCTACTAGTCATGTTTCTACACAGCCATCTTCGGGTGGTTTACAATCCTTGGTGGAGACTCTCAATGAAGATGCCCGTGCTGACTACAGAAACTTATCTGCTGCTGCTGTCCGTGGAGAATATGATACATGTCTCATCTATTCTGATCAGTTGAAACAGAGATGTGTTGAACAGTTCAAAGATGGGTCCTTGGATATTGAGCAGCTCGCTGCAGTGGATAGCATTTGTGATTGGGTGTCGAAGGCTATCGGGGTTGCTGATCCTGTCCGCACTTACCATGTGAATCTGTCAGTTTTCACCTCAATCCCTGATTTTTGGGGCTTCAGCCAATTGTTTCCTATTGTTCCAATTCACCGTCTGGATGAAAAGCCTACAATGAGAGGAATACTGTCTGACCTGACGTGTGACAGTGATGGAAAGGTTGATAAGTTCATTGGGGGCGAATCAAGCTTGCCGCTCCATGAAATTGGAAGTGGTGATGGTGGGCGGTATTATCTGGGGATGTTTTTGGGTGGGGCTTATGAGGAGGCGCTCGGAGGACTCCACAATCTATTTGGTGGACCAAGCGTTGTTCGGGTGATGCAGAGCGATAGCCCTCACAGCTTTGCGGTGACTCGCTCTGTCCCTGGTCCATCGTGTGCTGATGTGCTCCGGGCGATGCAGTTTGAGCCTGAACTCATGTTCGAGACTCTCAAGCACCGTGCAGAGGAATTCTTGGAACAAGGAGAAGGAGAAGGCGAAGGTGTTGCCTTTGGATCTTTGACCAGCAGCTTAGCTCAGTCCTTCCACAACATGCCTTACCTTTCGTCTTGCTGCTTCACTGCAGAAGCCACTGCCAATGCCAATACCAATACCAATAATGGTGGCTATTACTATTACAGTGAAGACAATGCTGCAGCAGAGGAAGATGAGATTTGGTCCTACTAAACTCTGCTTGAAGTGTCTCTTGTTAGCATCTCCAGTTTGTTTTAGTTTGTGGTCGAGGTCGTCTGTTTTTTTATAATAATCCCACCCCTTAGTTTGGGTGCATGTTAATTACTTTTGTTTGCAATAGATGCAGTAGACTGTCATCTCCTATTGCAACTAAGCTTATGTTATGACCGCAATCAGTTTTATATTAATGCTGTCTTTTTTTGTTTCAAGTATTGAATCGCCTCCTTATGTTTGATGATGGTGTTAATTGAATCGCCTCCTTACGGGGGTAG
ATAAAATCAGAAATCGAATCGATAACCTAATAAAAAAGTTTGTGAAACCTTTAAAAAACAGTTAACCCAATAACGTTCCAGCTAATCAAGTTCATTCCAGCTCCCTATGAGCTCATAGTCGCTGGAAGGAATAAAAGCTTGTTCCATCAATATCAATAAACCAATAATATTTCTCGATTCGATTCATTGGTTAAATAGATTTTTGCATACACATACATATATTCGAAAGATGAAGCTTGAAAGTCAAAGAAAAAAATTTTAATTTCTGAAAAGAAAAATCACTTTATTGTTGCTCAAAAATAATGATTTTTAAAAACTTTTTTAAAAGTTGTTAGATTACTTTTAGTTAAAAAGTTGTTAAAAAAGTGCTTTCTTCCTTAAATTAAGTATTTTACCTACAATCCTCAATAAATATCGATCATACTTCTTCAATTCGTCGGATACATGTATCAAACTTATGAAATATCATATAAAATAATATTCGAAATAATCGTAAATGTTAGTAATAATTAGAATCTAAACTAGCTTTATTTGCGCAATTTAACCTAATTTAGAATTCCTACTCCAAGAAGAAGAAGCATAAGAGAAAGTGAGAGAGTTTCGATGGGCCGAAAAATGGGGCCCACGGCCCAGCCACGGATTTTAGCCCTATATAAAGCGTCTTCGTCTCATGCAAATCTCGCTCACTTCATAAGCTGTTAGTTTCACGTTCTCTTCGCAATTTCCATTACAGCCGCTAGGTTTCCGTCCACTTCTTCTTCTCCATTAATATCTGTATGGTGTTCTTCTTTTTTGAATTCTAGATTTTTTCTTTGAATTCTTGTTAATCTTTAATTTTCTTTGTTTAAATCAAGAAATTAGCTTCTTCTGAAGTCAGGGTGGGGATTTTTGGATCGTGTCAAAGTGTGTTAGAGGGTGATTATCTTTTGATTCACTTGTTTTTTTGCTTCTTTTGAGGGGGTAGCCGGGGCCTCGGCCTCGGCGGGTTTTAATAGCCCCCAACTATTACAACATTGGGAAGAAGAACATCAATCTGTACAAACCCTTAAGTTAGTTTTTCTTTTTAATTCTTTGATTCTTTCTTCTTAACAAATCAAAACAGATCGGGGAAGAGATGCCGGCCTTAGGTTGTTGTGTAGACGCTTCTGTTTCCCCTCCTCTCGGCTATGCCTTTTCTTGGGATAGCTCTCTTCCCGCGCCGGAGTTGTTTTCCTCCGGCGTACCTCCGGCGACAAACGCCGCCGCCGTTTCCACCGGTTCTCATTGGTCTACGGATCTGTCATCTGATTTGTACCGGGTAGATGGGTGGGGTGCTCCTTATTTCTCCGTGAACTCTTCCGGGGATATTTCCGTCCGTCCACATGGTACGGATACTCTTCCTCACCAGGAGATTGACCTTCTTAAGGTTGTGAAGAAGGCTTCTGACCCGAAAAATTTGGGTGGACTTGGGCTCCAGATGCCTCTTGTTGTCCGTTTTCCTGATGTTCTGAAGAACCGTTTGGAGACTCTGCAATCGGCTTTTGACATGGCGATTAATTCTCAAGGCTATGAGGCTCACTATCAAGGTGTTTATCCGGTGAAATGCAATCAAGATAGGTTCGTGGTGGAGGATATCGTGAAATTCGGGTCGCCATACCGATTCGGGCTGGAAGCCGGGTCTAAACCGGAGCTCCTGTTGGCGATGAACTGTCTGTCAAAGGGCAGTGCTGATGCTCTTCTTGTTTGCAATGGTTTCAAGGACACTGAGTATATTTCGCTTGCTTTGGTCGCAAGAAAGCTCCTTTTGAACAGTGTGATTGTGCTTGAACAAGAGGAGGAGCTTGACCTGGTGATTGATATCAGCCGTAAGATGTCTGTCCGGCCTGTAATTGGACTTCGTGCTAAGCTCAGGACAAAGCATTCTGGCCATTTTGGATCCACTTCTGGTGAAAAGGGTAAGTTTGGGTTGACAACAACCCAGATTCTTCGTGTAGTGAAGAAGCTtgatgaatcTGGAATGCTGGATTGTCTCCAGTTATTGCATTTTCACATTGGATCTCAGATCCCCACAACAGAGTTGCTTGCTGATGGTGTTGGTGAGGCCACTCAGATTTACTCTGAATTAGTCCGTCTTGGAGCTGGTATGAAATTCATTGATATCGGAGGGGGGCTTGGAATCGACTATGACGGTTCTAAATCAAGCAATTCTGATGTCTCTGTTTGCTATAGCATTGAAGAATATGCCTCTGCTGTTGTCCAAGCGGTCCTCTATGTCTGTGATCGTAAGGGCGTAAAGCATCCAGTGATTTGCAGCGAAAGTGGCAGGGCAATTGTTTCTCACCATTCAATTCTGATTTTTGAAGCCGTGTCTGCTTCTACTAGTCATGTTTCTACACAGCCATCTTCGGGTGGTTTACAATCCTTGGTGGAGACTCTCAATGAAGATGCCCGTGCTGACTACAGAAACTTATCTGCTGCTGCTGTCCGTGGAGAATATGATACATGTCTCATCTATTCTGATCAGTTGAAACAGAGATGTGTTGAACAGTTCAAAGATGGGTCCTTGGATATTGAGCAGCTCGCTGCAGTGGATAGCATTTGTGATTGGGTGTCGAAGGCTATCGGGGTTGCTGATCCTGTCCGCACTTACCATGTGAATCTGTCAGTTTTCACCTCAATCCCTGATTTTTGGGGCTTCAGCCAATTGTTTCCTATTGTTCCAATTCACCGTCTGGATGAAAAGCCTACAATGAGAGGAATACTGTCTGACCTGACGTGTGACAGTGATGGAAAGGTTGATAAGTTCATTGGGGGCGAATCAAGCTTGCCGCTCCATGAAATTGGAAGTGGTGATGGTGGGCGGTATTATCTGGGGATGTTTTTGGGTGGGGCTTATGAGGAGGCGCTCGGAGGACTCCACAATCTATTTGGTGGACCAAGCGTTGTTCGGGTGATGCAGAGCGATAGCCCTCACAGCTTTGCGGTGACTCGCTCTGTCCCTGGTCCATCGTGTGCTGATGTGCTCCGGGCGATGCAGTTTGAGCCTGAACTCATGTTCGAGACTCTCAAGCACCGTGCAGAGGAATTCTTGGAACAAGGAGAAGGAGAAGGCGAAGGTGTTGCCTTTGGATCTTTGACCAGCAGCTTAGCTCAGTCCTTCCACAACATGCCTTACCTTTCGTCTTGCTGCTTCACTGCAGAAGCCACTGCCAATGCCAATACCAATACCAATAATGGTGGCTATTACTATTACAGTGAAGACAATGCTGCAGCAGAGGAAGATGAGATTTGGTCCTACTAAACTCTGCTTGAAGTGTCTCTTGTTAGCATCTCCAGTTTGTTTTAGTTTGTGGTCGAGGTCGTCTGTTTTTTTATAATAATCCCACCCCTTAGTTTGGGTGCATGTTAATTACTTTTGTTTGCAATAGATGCAGTAGACTGTCATCTCCTATTGCAACTAAGCTTATGTTATGACCGCAATCAGTTTTATATTAATGCTGTCTTTTTTTGTTTCAAGTATTGAATCGCCTCCTTATGTTTGATGATGGTGTTAATTGAATCGCCTCCTTACGGGGGTAG
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc01g110440.2.1 Arginine decarboxylase (AHRD V1 **** Q9SCF0_DATST); contains Interpro domain(s) IPR002985 Arginine decarboxylase
MPLVVRFPDVLKNRLETLQSAFDMAINSQGYEAHYQGVYPVKCNQDRFVVEDIVKFGSPYRFGLEAGSKPELLLAMNCLSKGSADALLVCNGFKDTEYISLALVARKLLLNSVIVLEQEEELDLVIDISRKMSVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLDESGMLDCLQLLHFHIGSQIPTTELLADGVGEATQIYSELVRLGAGMKFIDIGGGLGIDYDGSKSSNSDVSVCYSIEEYASAVVQAVLYVCDRKGVKHPVICSESGRAIVSHHSILIFEAVSASTSHVSTQPSSGGLQSLVETLNEDARADYRNLSAAAVRGEYDTCLIYSDQLKQRCVEQFKDGSLDIEQLAAVDSICDWVSKAIGVADPVRTYHVNLSVFTSIPDFWGFSQLFPIVPIHRLDEKPTMRGILSDLTCDSDGKVDKFIGGESSLPLHEIGSGDGGRYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQSDSPHSFAVTRSVPGPSCADVLRAMQFEPELMFETLKHRAEEFLEQGEGEGEGVAFGSLTSSLAQSFHNMPYLSSCCFTAEATANANTNTNNGGYYYYSEDNAAAEEDEIWSY*
MPLVVRFPDVLKNRLETLQSAFDMAINSQGYEAHYQGVYPVKCNQDRFVVEDIVKFGSPYRFGLEAGSKPELLLAMNCLSKGSADALLVCNGFKDTEYISLALVARKLLLNSVIVLEQEEELDLVIDISRKMSVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLDESGMLDCLQLLHFHIGSQIPTTELLADGVGEATQIYSELVRLGAGMKFIDIGGGLGIDYDGSKSSNSDVSVCYSIEEYASAVVQAVLYVCDRKGVKHPVICSESGRAIVSHHSILIFEAVSASTSHVSTQPSSGGLQSLVETLNEDARADYRNLSAAAVRGEYDTCLIYSDQLKQRCVEQFKDGSLDIEQLAAVDSICDWVSKAIGVADPVRTYHVNLSVFTSIPDFWGFSQLFPIVPIHRLDEKPTMRGILSDLTCDSDGKVDKFIGGESSLPLHEIGSGDGGRYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQSDSPHSFAVTRSVPGPSCADVLRAMQFEPELMFETLKHRAEEFLEQGEGEGEGVAFGSLTSSLAQSFHNMPYLSSCCFTAEATANANTNTNNGGYYYYSEDNAAAEEDEIWSY*
Gene model matches
Gene model matches
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SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
[loading...]
GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
L16582 Lycopersicon esculentum arginine decarboxylase mRNA, complete cds.
| Other genome matches | None |
Literature annotations [1]
Literature annotations [1]
| [Associate publication] [Matching publications] |
Cloning of tomato (Lycopersicon esculentum Mill.) arginine decarboxylase gene and its expression during fruit ripening.
Plant physiology (1993)
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Arginine decarboxylase (ADC) is the first enzyme in one of the two pathways of putrescine biosynthesis in plants. The genes encoding ADC have previously been cloned from oat and Escherichia coli. Degenerate oligonucleotides corresponding to two conserved regions of ADC were used as primers in polymerase chain reaction amplification of tomato (Lycopersicon esculentum Mill.) genomic DNA, and a 1.05-kb fragment was obtained. This genomic DNA fragment encodes an open reading frame of 350 amino acids showing about 50% identity with the oat ADC protein. Using this fragment as a probe, we isolated several partial ADC cDNA clones from a tomato pericarp cDNA library. The 5' end of the coding region was subsequently obtained from a genomic clone containing the entire ADC gene. The tomato ADC gene contains an open reading frame encoding a polypeptide of 502 amino acids and a predicted molecular mass of about 55 kD. The predicted amino acid sequence exhibits 47 and 38% identify with oat and E. coli ADCs, respectively. Gel blot hybridization experiments show that, in tomato, ADC is encoded by a single gene and is expressed as a transcript of approximately 2.2 kb in the fruit pericarp and leaf tissues. During fruit ripening the amount of ADC transcript appeared to peak at the breaker stage. No significant differences were seen when steady-state ADC mRNA levels were compared between normal versus long-keeping Alcobaca (alc) fruit, although alc fruit contain elevated putrescine levels and ADC activity at the ripe stage. The lack of correlation between ADC activity and steady-state mRNA levels in alc fruit suggests a translational and/or posttranslational regulation of ADC gene expression during tomato fruit ripening.
Rastogi, R. Dulson, J. Rothstein, SJ.
Plant physiology.
1993.
103(3).
829-34.
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