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Tomato locus vsf-1
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases
Links to external databases
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vsf-1 is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch04, position: 65191855
Please cite Razifard et al.
| Registry name: | None | [Associate registry name] |
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Accessions and images (0)
Accessions and images (0)
| [Associate accession] |
Accession name:
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| Alleles (0) | None | [Add new Allele] |
Associated loci (0)
Associated loci (0)
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| Associated loci - graphical view | None |
SolCyc links
SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc04g081190.2 SL2.50ch04:65191253..65194728
CTCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAGGTATGGAAATAGATGCTAATGTATTCTAGTTTATATTTGTATCCCATTAAGAAGCATAAACTTGAGTTATCCATGAAAAATTGAAAAAATATATATAAGGAGGGTGCTACATATACAATTGTACCTGATAGTTTCTTTCCTCAGGATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAGGTGCCTGTAGAAAATATTGTGGTGTACCTTCAATAGTTCTTTTATGAACTTCAGTCTGTTTACTGGATTTTCATTCTTGTTACAGAAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATGGTATTACCGTTCCAATTTCTTTTTTCTTTTGTTTTCCAAGTCCCTAGTGTGTTGCAAAAAGGTATCTAGAATAAAATAAGATATGTTCCATAGTATAATCGTTTTAAATTAGAATATACTCTAATGTTTTTTTTTACCTCTTAAAATTAAATTCATCAAACTTGGAGAAGTTTGGAAATAATTGGGTGTTTACTGAATACAGCTGGATAATTAGTTTATAGAAAGAGAAGTTTGCAAATTTAAGTTTTATAAAAAGAAAAGCTTGGAACTTGGCCTGATTTGAGCTTCATGGTTCTAGCCTTCTACATATTGAATTTGTTGCTATTGTTTGAAGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTTTACAATGGCATATAGAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGTGAACATCTGATGCACCTACCCATAAAGATGGATATTCATAACTTTAGCTTTCCGCTGCAGCTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCAATGTTTTCTCCTA
CTCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAGGTATGGAAATAGATGCTAATGTATTCTAGTTTATATTTGTATCCCATTAAGAAGCATAAACTTGAGTTATCCATGAAAAATTGAAAAAATATATATAAGGAGGGTGCTACATATACAATTGTACCTGATAGTTTCTTTCCTCAGGATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAGGTGCCTGTAGAAAATATTGTGGTGTACCTTCAATAGTTCTTTTATGAACTTCAGTCTGTTTACTGGATTTTCATTCTTGTTACAGAAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATGGTATTACCGTTCCAATTTCTTTTTTCTTTTGTTTTCCAAGTCCCTAGTGTGTTGCAAAAAGGTATCTAGAATAAAATAAGATATGTTCCATAGTATAATCGTTTTAAATTAGAATATACTCTAATGTTTTTTTTTACCTCTTAAAATTAAATTCATCAAACTTGGAGAAGTTTGGAAATAATTGGGTGTTTACTGAATACAGCTGGATAATTAGTTTATAGAAAGAGAAGTTTGCAAATTTAAGTTTTATAAAAAGAAAAGCTTGGAACTTGGCCTGATTTGAGCTTCATGGTTCTAGCCTTCTACATATTGAATTTGTTGCTATTGTTTGAAGAATTTGGGAGGAAGGGAATTTTAATGGTTCCCGTGAACTCATAATTAAGTAGATCAGTTTCGTGAAGTACTTTTATGTGAGGTGCAAAAAGAGAAGAATAAATTAGTTTACAATGGCATATAGAGCCTTTGAAAGGGGAAAATAGGGGGAGAAGGACTATGGCCTGCTGGAAGGAAGACGGGGAGAGAGATGGTAGAAATCCATTTTAGATCTGTGAAGATAGGCGAAGAATACTCTGAAGGAAGCCAAATAGGAAACATACTATTCGTGTCAGGGAAGCCTATGAGATAAACGGAAAATAATTAGGGACCCAAGTTCACAATAATAACTCAATGATATGTGAAAATGATGCACAATCAATATCTCTTTGATTACTTTTGTTTGGTTGGTTGGAAATTTCAAAATGTAAGCAATGTGAAAATTTCAATATCCCTCACTGAGCACTGAAAAACCCGAGCCAGATAACCAAAATATTTGATGTACCTGTTTCAGTAATAATATTTGATTCTAACCAGTAACTAGCTGGCCTACTCAGGAGGCATGATTTTCTTAAACAGTTCCACAACATCAGTATCTCCTATTGAAAAACATTATATTTTCCAAAAAGCAGGTTTGCCTGTGTTTGTTTGATTATCTCAGGATACATTTATATTAATCTGAAGGAAGGACAAGTTATACTGTTCTAGTCATTTGGATTGACCAGGGACAATGTCCAAATCACATTTTATACTCGACATTCAAGACATATAGATATGCTGATACTATGTGAACATCTGATGCACCTACCCATAAAGATGGATATTCATAACTTTAGCTTTCCGCTGCAGCTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCAATGTTTTCTCCTA
| Download sequence region |
Get flanking sequences on SL2.50ch04
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mRNA Solyc04g081190.2.1
mRNA Solyc04g081190.2.1
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Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc04g081190.2.1 BZIP transcription factor family protein expressed (AHRD V1 ***- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1
CTCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAGGATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAGAAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATGCTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCAATGTTTTCTCCTA
CTCTACTCTTCTCTTTCATATCAGTACAAGTTATTTTCATTTTCTCTTACAAATTCAACCGTAATCACCGCCATTTTCAGCGGGAAATTCACCTTCTCTCCAAAATCCCATTTTTTCCCCTATAACCCCACCCCCCACAACTTCACTTTCATCAATGTTTGCACGTTTGTCTCTCATCATATTCAACTGTAGCTCCTTTAAATTTTGACTATAAACTTTCAGGTACTCCGTTTTCTTCCTTGCTCTGCTTTTCTCAATCTTGTTTTTCATTCATCTGTTGTTTGGGGTTTTGTGTTTGTTTGAATTGGATTGGGTTGAAACAGTTTTTTTTTTGGGTGGGTTTAAGGAGTTTTCTATTTAGGGTTTTGCTGGGAGCTGAAATTTTGATTTATTTAATGAGAATTGCTGAAGTTCTTTGATTATTACGAAGAAATAGCATTTGGGGTGTCGGAAAAATTGAATCTTTTGCGGGTTTTATTTGTTGATTTTTGATGGCTCAGTCTAATTCTAAGCCACCTATGAGTAGTCAGAATTTTGGTGTTGGAGCTGTATCTCATGTGAGGTCGTTATCTCAATCGAGTATTTTCTCGAATAGTTGTTTGCCCCCATTGAGTCCTTTTCCTCCTAGTGAGCCGGGGATGGTGTCGGGTCATTCTAGCTTGAAAGATATATCCATGGAGGAAGCAGATGTGAATTCTCAAGGTGTAGGAGTTGTGTCTTCGTTTACGAGGGATGGTCTTCCTCCTCGGAAGGGGCATCGTCGATCTAATAGTGATGTTCCATTGGGATTCTCGGCTATGATTCAGTCTTCACCTCAGTTGATGCCTATAAGTGGTCAGAAGGTTTTAGGGAGAGCAGTGAGTCTTGGGGATAGCAATGGAAAGATTGATGAGAGGAAACCAAAGGGAGAGGTTACAGATGAGTTGTTGTTTTCCTACATGAATTTGGAAAATATAGAGACATTGAACGGTTCTGGCACGAAGGACAGAGATAAGGACAGCATTGTCAGTGGGACAAAGGTAACCGGTTCTGAGAGCAGCAATAATGAAGCAGAAAGTGTTATGAAAGGGAATAATGTTAGTATCCAACCAACAAATTTAAGGGAAGGAACCAAGAGGAGCGCTGATGCGAATATTGCTCCAGCTGCACGTCACTTTAGGAGTCTTTCCATGGATAGTGCTATTGGAAATTTTCACTATGGCGATGAGTCACCAAATTTACCAACTTCTCTGATGATGCGTTCCGGTCAGCTTTCACCAAGTAATTCAGGAAATGAAAGTTCGAGCAAGCACAATCTTGACTTCGGAAATTCTGAATTTAGTGAAGCTGAGATGAAGAAGATTATGGCAGATGAAAGACTTGCTGAGATTGCAGTTTTAGATCCCAAGCGTGCTAAAAGGATTTTGGCTAATCGTCTGTCTGCTGCTCGATCCAAGGAGCGAAAAACACGTTACATCTCAGAATTGGAACACAAGGTTCAAAAGCTACAGACAGAAACAACTACCTTATCCACACAAGTTACAATCCTGCAGAAAAATTTTGTTGAGATTTCAAGCCTGAACAGTGAGCTGAAATTCCGCATCCAAGCCATGGAGCAACAGGCACAGCTTAGAGATGCTCTGCATGAGGCATTAACTGCAGAAGTCCAACGTCTAAAGCTTGCTGCTGGGGAACATAGGGAGGAAGGACGGTTGCCTAATAACATGACACAACAGACACCAGTGAAGCATAATATATTCCAGATGCAGCGTCAGCAGCCTAGTCAAATGCAACAATTATCTGTTGGTAAAGCATCTGCGGCTTCAGCAACACCTGCATCCGCCTAGTGGGCGAAGATTAAAGCCTTTGAGGAGGTGAAGATTATCTCTACATGAAGCCTAAAAGTTTATTACTTCAATTATCGGTCTTACATGCTACGCACAAACAGTGAGAAACTAAGCTTTCAGATAGTATTATATTCATATAAGTTTCTTATGTGTGTCTGGCTACAATTTATACTATATGTAGTGAATCATTATTTTGTTCTTTGGAAATGACTGTATCAATAAATTGGAGTCAAACTTTGTGGTGCCAATGTTTTCTCCTA
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc04g081190.2.1 BZIP transcription factor family protein expressed (AHRD V1 ***- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1
MAQSNSKPPMSSQNFGVGAVSHVRSLSQSSIFSNSCLPPLSPFPPSEPGMVSGHSSLKDISMEEADVNSQGVGVVSSFTRDGLPPRKGHRRSNSDVPLGFSAMIQSSPQLMPISGQKVLGRAVSLGDSNGKIDERKPKGEVTDELLFSYMNLENIETLNGSGTKDRDKDSIVSGTKVTGSESSNNEAESVMKGNNVSIQPTNLREGTKRSADANIAPAARHFRSLSMDSAIGNFHYGDESPNLPTSLMMRSGQLSPSNSGNESSSKHNLDFGNSEFSEAEMKKIMADERLAEIAVLDPKRAKRILANRLSAARSKERKTRYISELEHKVQKLQTETTTLSTQVTILQKNFVEISSLNSELKFRIQAMEQQAQLRDALHEALTAEVQRLKLAAGEHREEGRLPNNMTQQTPVKHNIFQMQRQQPSQMQQLSVGKASAASATPASA*
MAQSNSKPPMSSQNFGVGAVSHVRSLSQSSIFSNSCLPPLSPFPPSEPGMVSGHSSLKDISMEEADVNSQGVGVVSSFTRDGLPPRKGHRRSNSDVPLGFSAMIQSSPQLMPISGQKVLGRAVSLGDSNGKIDERKPKGEVTDELLFSYMNLENIETLNGSGTKDRDKDSIVSGTKVTGSESSNNEAESVMKGNNVSIQPTNLREGTKRSADANIAPAARHFRSLSMDSAIGNFHYGDESPNLPTSLMMRSGQLSPSNSGNESSSKHNLDFGNSEFSEAEMKKIMADERLAEIAVLDPKRAKRILANRLSAARSKERKTRYISELEHKVQKLQTETTTLSTQVTILQKNFVEISSLNSELKFRIQAMEQQAQLRDALHEALTAEVQRLKLAAGEHREEGRLPNNMTQQTPVKHNIFQMQRQQPSQMQQLSVGKASAASATPASA*
Gene model matches
Gene model matches
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SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
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GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
| Other genome matches | None |
Literature annotations [1]
Literature annotations [1]
| [Associate publication] [Matching publications] |
In vitro binding of the tomato bZIP transcriptional activator VSF-1 to a regulatory element that controls xylem-specific gene expression.
The Plant journal : for cell and molecular biology (1996)
Show / hide abstract
Show / hide abstract
The bean grp1.8 gene is specifically expressed in vascular tissue. Monomers and multimers of a 28 bp regulatory element of the grp1.8 promoter (vs-1) specifically activated both the -82 CaMV 35S and the -76/grp1.8 minimal promoters in vascular tissue of transgenic tobacco plants. vs-1 partially overlaps with a negative regulatory element in the grp1.8 promoter that is necessary for restriction of gene expression to vascular tissue. Nuclear extracts from tobacco and tomato cells contain a factor that binds to vs-1 in vitro. To study the molecular basis of xylem-specific expression mediated by the vs-1 promoter element, a gene was isolated from tomato encoding a protein that binds to vs-1 in vitro. This protein, designated VSF-1, contains a bZIP motif close to the C-terminus. Mutated vs-1 elements were no longer bound by VSF-1 and also failed to activate the minimal -82 CaMV 35S promoter in vivo. Transient expression of VSF-1 in protoplasts stimulated vs-1 dependent activation of the -76/grp1.8 minimal promoter. Binding studies and use of a polyclonal antiserum against VSF-1 provided further evidence that vs-1 is a potential in vivo target site, as VSF-1 was a part of the observed complex formed between vs-1 and nuclear protein extract. vs-1 does not contain the 5'-ACGT-3' core sequence that is part of known plant bZIP protein binding sites or another palindromic sequence. Based on the unusual binding specificity and a characteristic amino acid sequence in the bZIP domain we propose that VSF-1 and the partially homologous PosF21, a bZIP protein from Arabidopsis, belong to a new family of plant bZIP proteins.
Torres, Schumann. Ringli, C. Heierli, D. Amrhein, N. Keller, B.
The Plant journal : for cell and molecular biology.
1996.
9(3).
283-96.
Ontology annotations (5)
Ontology annotations (5)
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