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Tomato locus LEU13054 endo-1,4-beta-glucanase precursor
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases
Links to external databases
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LEU13054 endo-1,4-beta-glucanase precursor is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch08, position: 64614298
Please cite Razifard et al.
| Registry name: | None | [Associate registry name] |
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Accessions and images (0)
| [Associate accession] |
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| Associated loci - graphical view | None |
SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc08g081620.2 SL2.50ch08:64615480..64611928 (sequence from reverse strand)
CTAACATAAACATAATATTAAATAGTCATAAACCATATGTTAAATAATAATAATAATTAATTAATAATAACAATATGGCTTGTTCAAAGAATATTTGGGTTATTGTTATATTCTTTTTGTGCATTTTGGCTGGTCCTATTATTGCTCAAGATTACAATGATTCACTTGGCAAAGCTATTTTATTCTTTGAAGGGCAACGTTCTGGAAAATTACCAGTTTCTCAAAGAGTCAAATGGAGAGGAGATTCCGCACTCATCGATGGCATAATTGAACATGTATGTATCTATTTAAAAAAGAATGACGTATGAGTTATATGTTTTTTAAAAAATTTATGTAAATTCAATATTTTGATACATTAGGTGAATTTGATTGGAGGCTACTATGATGCTGGTGACAATGTAAAATTTGGATGGCCCATGGCTTATTCTTTAACCTTGTTGAGTTGGGCTGCTATTGAATATCAAACACAAATCTCTTCAACAAATCAACTTGTACACCTCCAAAATGCAATTCGTTGGGGCACAAATTTCTTAATTCGAGCCCATACTTCAAGTACAACTCTCTATACTCAGGTCAGTGTATCGTCTCATTTAAAATTTTAAATTATATATTTTAGGTTTACACCATGCTCATCAACTCGTTCCCTTAAGGTTAAACGCATGAAAATTATTCTTTTCTTGTATTGTGTAGTAAAGAGATCGCTTGAATCTAAGACATCGTTCTTTTACAATAGAATATCGAATTACATGTACCATATTGTCTAAAAGTTTAAAAAGTATCAAAAATGAGAACCATTATTTATTTATTTTGAATTTGCGACATTTGTATTTTTATATTATCAGTATTCCTCCATCCTTAACTAGGAAATCTTCAGGAAGTTAAGTATCGGTCCAGAGTCCAAAAAGCTAATTTGTAACATGTTGGTGTGCACAAATTCTGAAAATGAAATCATTTTTGATAAGAAACGTTTTACCTTTTAAAGTAAAACTTTTTGACGTGAATTCAAATTAATCTGACTTTAAAACGAGTTATGTAATATTAACAAATACATTATATGGACAGGTTGGAGATGGAAATGCAGATCACCAATGTTGGGAAAGACCAGAAGACATGGATACTCCTAGAACACTATATAAAATAACATCAAATTCTCCAGGATCTGAGGTGGCAGCTGACGTGGCAGCTGCTTTTGCTGCTGCTTCAATAGTTTTCAAAAATATTGATTCCAACTATTCTACAAAGTTATTAAAAAGATCAAGATCCGTAAGCATATAACTTTTAGAAAAAAAAATAATATTTATTTTAAAAGCTTGATCGAACAGATTATTAATTAATTGATATTTGGGCGCACAGTTATTTGCATTTGCGGATAAGTATAGAGGATCTTACCAAGCTTCTTGTCCATTCTATTGTTCCTACTCAGGTTATAAGGTTGTAAATAATTTCAAAAATTATTCATTTGTTACTATTATTTATTTATTTATTGAAGTATAAGTTAATTAGTGTTTTTAATTAATTTATTTTTTATAGGATGAATTGTTGTGGGCTGCTGCTTGGCTATATAAGGCAGGTGGAGGAAACAATTATTTAAATTATGCTTCAATCAACCAAGGTTGGAGTCAAGTTGCCTCTGAGTTTAGTTGGGATGACAAGTTTGCTGGAGCCCAAACTTTACTAGCTAAGGTCAATCCTTTATACATGAATTCAAATATTATATTTGTTATTCTGGTTGATCAGTGTGCGAATAAATTCTTATGTCGATAGCTACAAGAATTGAAACGCTATGTATAAGGTTTAGGATCTCTTAAATCGTGCAGAATTAATCCTACACAGATAATATTGCACCGAGTTAAAAGTACTTTGGATTGATTTAGCCCAACAGTTGATATCATAGTCCAGGTTCAACTAGGATCAAGAGTATGACCAAGGCAAATGTTTGTAATATATAGAGTGAATCTCGGGAATTGACACGTGAGTCGTGGTGATGGGCCACATAGTGAGGAGGAGATTGTTGGATGTGCAAACAAAATCTTACACTGATAAGCTCAAAAGATTGAGAAACTACATCTCTTAAAAGATAGAGACCTTTTAAGGAAAAACCGCGTGAGCTTGATCCAAAACTGACTATATTACTCCATGTCAAGAATATTTTGGGCTCAGACAATTAAAACGTTAAATTCTATATATTAATAATGTAAAATACATTTATACAATCAGATATAACGAATTCAGTAAATCTCTAAGATAAGCATTAATCGATAATTAGATAAAAATGATAACTAACTTGTTAAATAAGTGATAAATTTACTATTTCTATGAGTAGCTCAACATAGTGTGATTTAAATTTAACAATCACAAGTACAAATTACTAAACATTTTTATGATCAGGAATACCTTAATGGAAAGAGCAATTTGGAAAAATTCAAGAAAGATGCTGATTCATTTATTTGTGGATTAATGCCAGAAAGTAGCTCTATACAAATTAAGACAACCCCAGGTAAAACAAAAAAGAAGAAGAAAATATTCAAATTTTAGAATCTATACTTTCTTGATATTTGAATTTTAAAATATAACATAATACTTTCTTATACTATGGTTTATAATTTACAGGTGGACTTTTGTATTATAGAGATAGTAGCAATTTGCAATATGTGAATGGTGCCACTATGGTACTTTTTATGTACACTAAAGTCCTTGAGGCAGCTGGAATAGGAGGAGTTACATGTGGATCTGTTAATTTTTCCACATCCAAGATTAAAGCCTTTGCAAAATTACAGGTCAAATGCACATAACAATTTTTTACATCCAACATATTATTATAATATGTCACTAACCATTTTCCATGTTACGAATCAATACTTCGATATTTAAAATTATTTTTTATATTATCTAATTGTATATATATATTTTTTATACATATCGATAAATGAAACTTAAACTCGTTAATTTTTTCAGGTTGACTACATACTTGGAAACAATCCACTCAAAATGTCATACATGGTGGGATTTGGCAACAAATATCCAACAAAACTTCACCATAGAGCCTCATCACTCCCTTCAATTTATAACCATCCAACTAGGGTGGGGTGCAACGATGGCTATAGTTCATGGTACAATTCTAACAATCCAAACCCTAACACACATGTCGGTGCGATCGTCGGTGGGCCTAATTCCGGGGACCAATTTATTGATTCGCGATCAGATTACTCTCATTCTGAACCCACGACTTATATGAATGCAGCATTTATAGGGTCCGTGGCCGCTTTGATTGATCAAACCAAAGAAGGAGAACACTATGGGGAAATTAATTCACAATTTAACAAAACAGGTTTTATGTGATAGATAAATTAGTAAAGAAGTGAATGTCATGCAATTATTGATAAATATATGTACATATAATGAATTATCATAAATGTATGAAGCTATAAATATTACATAATAGAAATAAATAAATATCAAAAATGTATCAAACTCATGTGTTTAGATGCTTATCCGTCCTTTTCACTTGTCATATATGCTAAAAATAATATATATTGTTTCTCTCATCCCCCCC
CTAACATAAACATAATATTAAATAGTCATAAACCATATGTTAAATAATAATAATAATTAATTAATAATAACAATATGGCTTGTTCAAAGAATATTTGGGTTATTGTTATATTCTTTTTGTGCATTTTGGCTGGTCCTATTATTGCTCAAGATTACAATGATTCACTTGGCAAAGCTATTTTATTCTTTGAAGGGCAACGTTCTGGAAAATTACCAGTTTCTCAAAGAGTCAAATGGAGAGGAGATTCCGCACTCATCGATGGCATAATTGAACATGTATGTATCTATTTAAAAAAGAATGACGTATGAGTTATATGTTTTTTAAAAAATTTATGTAAATTCAATATTTTGATACATTAGGTGAATTTGATTGGAGGCTACTATGATGCTGGTGACAATGTAAAATTTGGATGGCCCATGGCTTATTCTTTAACCTTGTTGAGTTGGGCTGCTATTGAATATCAAACACAAATCTCTTCAACAAATCAACTTGTACACCTCCAAAATGCAATTCGTTGGGGCACAAATTTCTTAATTCGAGCCCATACTTCAAGTACAACTCTCTATACTCAGGTCAGTGTATCGTCTCATTTAAAATTTTAAATTATATATTTTAGGTTTACACCATGCTCATCAACTCGTTCCCTTAAGGTTAAACGCATGAAAATTATTCTTTTCTTGTATTGTGTAGTAAAGAGATCGCTTGAATCTAAGACATCGTTCTTTTACAATAGAATATCGAATTACATGTACCATATTGTCTAAAAGTTTAAAAAGTATCAAAAATGAGAACCATTATTTATTTATTTTGAATTTGCGACATTTGTATTTTTATATTATCAGTATTCCTCCATCCTTAACTAGGAAATCTTCAGGAAGTTAAGTATCGGTCCAGAGTCCAAAAAGCTAATTTGTAACATGTTGGTGTGCACAAATTCTGAAAATGAAATCATTTTTGATAAGAAACGTTTTACCTTTTAAAGTAAAACTTTTTGACGTGAATTCAAATTAATCTGACTTTAAAACGAGTTATGTAATATTAACAAATACATTATATGGACAGGTTGGAGATGGAAATGCAGATCACCAATGTTGGGAAAGACCAGAAGACATGGATACTCCTAGAACACTATATAAAATAACATCAAATTCTCCAGGATCTGAGGTGGCAGCTGACGTGGCAGCTGCTTTTGCTGCTGCTTCAATAGTTTTCAAAAATATTGATTCCAACTATTCTACAAAGTTATTAAAAAGATCAAGATCCGTAAGCATATAACTTTTAGAAAAAAAAATAATATTTATTTTAAAAGCTTGATCGAACAGATTATTAATTAATTGATATTTGGGCGCACAGTTATTTGCATTTGCGGATAAGTATAGAGGATCTTACCAAGCTTCTTGTCCATTCTATTGTTCCTACTCAGGTTATAAGGTTGTAAATAATTTCAAAAATTATTCATTTGTTACTATTATTTATTTATTTATTGAAGTATAAGTTAATTAGTGTTTTTAATTAATTTATTTTTTATAGGATGAATTGTTGTGGGCTGCTGCTTGGCTATATAAGGCAGGTGGAGGAAACAATTATTTAAATTATGCTTCAATCAACCAAGGTTGGAGTCAAGTTGCCTCTGAGTTTAGTTGGGATGACAAGTTTGCTGGAGCCCAAACTTTACTAGCTAAGGTCAATCCTTTATACATGAATTCAAATATTATATTTGTTATTCTGGTTGATCAGTGTGCGAATAAATTCTTATGTCGATAGCTACAAGAATTGAAACGCTATGTATAAGGTTTAGGATCTCTTAAATCGTGCAGAATTAATCCTACACAGATAATATTGCACCGAGTTAAAAGTACTTTGGATTGATTTAGCCCAACAGTTGATATCATAGTCCAGGTTCAACTAGGATCAAGAGTATGACCAAGGCAAATGTTTGTAATATATAGAGTGAATCTCGGGAATTGACACGTGAGTCGTGGTGATGGGCCACATAGTGAGGAGGAGATTGTTGGATGTGCAAACAAAATCTTACACTGATAAGCTCAAAAGATTGAGAAACTACATCTCTTAAAAGATAGAGACCTTTTAAGGAAAAACCGCGTGAGCTTGATCCAAAACTGACTATATTACTCCATGTCAAGAATATTTTGGGCTCAGACAATTAAAACGTTAAATTCTATATATTAATAATGTAAAATACATTTATACAATCAGATATAACGAATTCAGTAAATCTCTAAGATAAGCATTAATCGATAATTAGATAAAAATGATAACTAACTTGTTAAATAAGTGATAAATTTACTATTTCTATGAGTAGCTCAACATAGTGTGATTTAAATTTAACAATCACAAGTACAAATTACTAAACATTTTTATGATCAGGAATACCTTAATGGAAAGAGCAATTTGGAAAAATTCAAGAAAGATGCTGATTCATTTATTTGTGGATTAATGCCAGAAAGTAGCTCTATACAAATTAAGACAACCCCAGGTAAAACAAAAAAGAAGAAGAAAATATTCAAATTTTAGAATCTATACTTTCTTGATATTTGAATTTTAAAATATAACATAATACTTTCTTATACTATGGTTTATAATTTACAGGTGGACTTTTGTATTATAGAGATAGTAGCAATTTGCAATATGTGAATGGTGCCACTATGGTACTTTTTATGTACACTAAAGTCCTTGAGGCAGCTGGAATAGGAGGAGTTACATGTGGATCTGTTAATTTTTCCACATCCAAGATTAAAGCCTTTGCAAAATTACAGGTCAAATGCACATAACAATTTTTTACATCCAACATATTATTATAATATGTCACTAACCATTTTCCATGTTACGAATCAATACTTCGATATTTAAAATTATTTTTTATATTATCTAATTGTATATATATATTTTTTATACATATCGATAAATGAAACTTAAACTCGTTAATTTTTTCAGGTTGACTACATACTTGGAAACAATCCACTCAAAATGTCATACATGGTGGGATTTGGCAACAAATATCCAACAAAACTTCACCATAGAGCCTCATCACTCCCTTCAATTTATAACCATCCAACTAGGGTGGGGTGCAACGATGGCTATAGTTCATGGTACAATTCTAACAATCCAAACCCTAACACACATGTCGGTGCGATCGTCGGTGGGCCTAATTCCGGGGACCAATTTATTGATTCGCGATCAGATTACTCTCATTCTGAACCCACGACTTATATGAATGCAGCATTTATAGGGTCCGTGGCCGCTTTGATTGATCAAACCAAAGAAGGAGAACACTATGGGGAAATTAATTCACAATTTAACAAAACAGGTTTTATGTGATAGATAAATTAGTAAAGAAGTGAATGTCATGCAATTATTGATAAATATATGTACATATAATGAATTATCATAAATGTATGAAGCTATAAATATTACATAATAGAAATAAATAAATATCAAAAATGTATCAAACTCATGTGTTTAGATGCTTATCCGTCCTTTTCACTTGTCATATATGCTAAAAATAATATATATTGTTTCTCTCATCCCCCCC
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mRNA Solyc08g081620.2.1
mRNA Solyc08g081620.2.1
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Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc08g081620.2.1 Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9
CTAACATAAACATAATATTAAATAGTCATAAACCATATGTTAAATAATAATAATAATTAATTAATAATAACAATATGGCTTGTTCAAAGAATATTTGGGTTATTGTTATATTCTTTTTGTGCATTTTGGCTGGTCCTATTATTGCTCAAGATTACAATGATTCACTTGGCAAAGCTATTTTATTCTTTGAAGGGCAACGTTCTGGAAAATTACCAGTTTCTCAAAGAGTCAAATGGAGAGGAGATTCCGCACTCATCGATGGCATAATTGAACATGTGAATTTGATTGGAGGCTACTATGATGCTGGTGACAATGTAAAATTTGGATGGCCCATGGCTTATTCTTTAACCTTGTTGAGTTGGGCTGCTATTGAATATCAAACACAAATCTCTTCAACAAATCAACTTGTACACCTCCAAAATGCAATTCGTTGGGGCACAAATTTCTTAATTCGAGCCCATACTTCAAGTACAACTCTCTATACTCAGGTTGGAGATGGAAATGCAGATCACCAATGTTGGGAAAGACCAGAAGACATGGATACTCCTAGAACACTATATAAAATAACATCAAATTCTCCAGGATCTGAGGTGGCAGCTGACGTGGCAGCTGCTTTTGCTGCTGCTTCAATAGTTTTCAAAAATATTGATTCCAACTATTCTACAAAGTTATTAAAAAGATCAAGATCCTTATTTGCATTTGCGGATAAGTATAGAGGATCTTACCAAGCTTCTTGTCCATTCTATTGTTCCTACTCAGGTTATAAGGATGAATTGTTGTGGGCTGCTGCTTGGCTATATAAGGCAGGTGGAGGAAACAATTATTTAAATTATGCTTCAATCAACCAAGGTTGGAGTCAAGTTGCCTCTGAGTTTAGTTGGGATGACAAGTTTGCTGGAGCCCAAACTTTACTAGCTAAGGAATACCTTAATGGAAAGAGCAATTTGGAAAAATTCAAGAAAGATGCTGATTCATTTATTTGTGGATTAATGCCAGAAAGTAGCTCTATACAAATTAAGACAACCCCAGGTGGACTTTTGTATTATAGAGATAGTAGCAATTTGCAATATGTGAATGGTGCCACTATGGTACTTTTTATGTACACTAAAGTCCTTGAGGCAGCTGGAATAGGAGGAGTTACATGTGGATCTGTTAATTTTTCCACATCCAAGATTAAAGCCTTTGCAAAATTACAGGTTGACTACATACTTGGAAACAATCCACTCAAAATGTCATACATGGTGGGATTTGGCAACAAATATCCAACAAAACTTCACCATAGAGCCTCATCACTCCCTTCAATTTATAACCATCCAACTAGGGTGGGGTGCAACGATGGCTATAGTTCATGGTACAATTCTAACAATCCAAACCCTAACACACATGTCGGTGCGATCGTCGGTGGGCCTAATTCCGGGGACCAATTTATTGATTCGCGATCAGATTACTCTCATTCTGAACCCACGACTTATATGAATGCAGCATTTATAGGGTCCGTGGCCGCTTTGATTGATCAAACCAAAGAAGGAGAACACTATGGGGAAATTAATTCACAATTTAACAAAACAGGTTTTATGTGATAGATAAATTAGTAAAGAAGTGAATGTCATGCAATTATTGATAAATATATGTACATATAATGAATTATCATAAATGTATGAAGCTATAAATATTACATAATAGAAATAAATAAATATCAAAAATGTATCAAACTCATGTGTTTAGATGCTTATCCGTCCTTTTCACTTGTCATATATGCTAAAAATAATATATATTGTTTCTCTCATCCCCCCC
CTAACATAAACATAATATTAAATAGTCATAAACCATATGTTAAATAATAATAATAATTAATTAATAATAACAATATGGCTTGTTCAAAGAATATTTGGGTTATTGTTATATTCTTTTTGTGCATTTTGGCTGGTCCTATTATTGCTCAAGATTACAATGATTCACTTGGCAAAGCTATTTTATTCTTTGAAGGGCAACGTTCTGGAAAATTACCAGTTTCTCAAAGAGTCAAATGGAGAGGAGATTCCGCACTCATCGATGGCATAATTGAACATGTGAATTTGATTGGAGGCTACTATGATGCTGGTGACAATGTAAAATTTGGATGGCCCATGGCTTATTCTTTAACCTTGTTGAGTTGGGCTGCTATTGAATATCAAACACAAATCTCTTCAACAAATCAACTTGTACACCTCCAAAATGCAATTCGTTGGGGCACAAATTTCTTAATTCGAGCCCATACTTCAAGTACAACTCTCTATACTCAGGTTGGAGATGGAAATGCAGATCACCAATGTTGGGAAAGACCAGAAGACATGGATACTCCTAGAACACTATATAAAATAACATCAAATTCTCCAGGATCTGAGGTGGCAGCTGACGTGGCAGCTGCTTTTGCTGCTGCTTCAATAGTTTTCAAAAATATTGATTCCAACTATTCTACAAAGTTATTAAAAAGATCAAGATCCTTATTTGCATTTGCGGATAAGTATAGAGGATCTTACCAAGCTTCTTGTCCATTCTATTGTTCCTACTCAGGTTATAAGGATGAATTGTTGTGGGCTGCTGCTTGGCTATATAAGGCAGGTGGAGGAAACAATTATTTAAATTATGCTTCAATCAACCAAGGTTGGAGTCAAGTTGCCTCTGAGTTTAGTTGGGATGACAAGTTTGCTGGAGCCCAAACTTTACTAGCTAAGGAATACCTTAATGGAAAGAGCAATTTGGAAAAATTCAAGAAAGATGCTGATTCATTTATTTGTGGATTAATGCCAGAAAGTAGCTCTATACAAATTAAGACAACCCCAGGTGGACTTTTGTATTATAGAGATAGTAGCAATTTGCAATATGTGAATGGTGCCACTATGGTACTTTTTATGTACACTAAAGTCCTTGAGGCAGCTGGAATAGGAGGAGTTACATGTGGATCTGTTAATTTTTCCACATCCAAGATTAAAGCCTTTGCAAAATTACAGGTTGACTACATACTTGGAAACAATCCACTCAAAATGTCATACATGGTGGGATTTGGCAACAAATATCCAACAAAACTTCACCATAGAGCCTCATCACTCCCTTCAATTTATAACCATCCAACTAGGGTGGGGTGCAACGATGGCTATAGTTCATGGTACAATTCTAACAATCCAAACCCTAACACACATGTCGGTGCGATCGTCGGTGGGCCTAATTCCGGGGACCAATTTATTGATTCGCGATCAGATTACTCTCATTCTGAACCCACGACTTATATGAATGCAGCATTTATAGGGTCCGTGGCCGCTTTGATTGATCAAACCAAAGAAGGAGAACACTATGGGGAAATTAATTCACAATTTAACAAAACAGGTTTTATGTGATAGATAAATTAGTAAAGAAGTGAATGTCATGCAATTATTGATAAATATATGTACATATAATGAATTATCATAAATGTATGAAGCTATAAATATTACATAATAGAAATAAATAAATATCAAAAATGTATCAAACTCATGTGTTTAGATGCTTATCCGTCCTTTTCACTTGTCATATATGCTAAAAATAATATATATTGTTTCTCTCATCCCCCCC
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc08g081620.2.1 Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9
MACSKNIWVIVIFFLCILAGPIIAQDYNDSLGKAILFFEGQRSGKLPVSQRVKWRGDSALIDGIIEHVNLIGGYYDAGDNVKFGWPMAYSLTLLSWAAIEYQTQISSTNQLVHLQNAIRWGTNFLIRAHTSSTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSNSPGSEVAADVAAAFAAASIVFKNIDSNYSTKLLKRSRSLFAFADKYRGSYQASCPFYCSYSGYKDELLWAAAWLYKAGGGNNYLNYASINQGWSQVASEFSWDDKFAGAQTLLAKEYLNGKSNLEKFKKDADSFICGLMPESSSIQIKTTPGGLLYYRDSSNLQYVNGATMVLFMYTKVLEAAGIGGVTCGSVNFSTSKIKAFAKLQVDYILGNNPLKMSYMVGFGNKYPTKLHHRASSLPSIYNHPTRVGCNDGYSSWYNSNNPNPNTHVGAIVGGPNSGDQFIDSRSDYSHSEPTTYMNAAFIGSVAALIDQTKEGEHYGEINSQFNKTGFM*
MACSKNIWVIVIFFLCILAGPIIAQDYNDSLGKAILFFEGQRSGKLPVSQRVKWRGDSALIDGIIEHVNLIGGYYDAGDNVKFGWPMAYSLTLLSWAAIEYQTQISSTNQLVHLQNAIRWGTNFLIRAHTSSTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSNSPGSEVAADVAAAFAAASIVFKNIDSNYSTKLLKRSRSLFAFADKYRGSYQASCPFYCSYSGYKDELLWAAAWLYKAGGGNNYLNYASINQGWSQVASEFSWDDKFAGAQTLLAKEYLNGKSNLEKFKKDADSFICGLMPESSSIQIKTTPGGLLYYRDSSNLQYVNGATMVLFMYTKVLEAAGIGGVTCGSVNFSTSKIKAFAKLQVDYILGNNPLKMSYMVGFGNKYPTKLHHRASSLPSIYNHPTRVGCNDGYSSWYNSNNPNPNTHVGAIVGGPNSGDQFIDSRSDYSHSEPTTYMNAAFIGSVAALIDQTKEGEHYGEINSQFNKTGFM*
Gene model matches
Gene model matches
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SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
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GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
U13054 Lycopersicon esculentum endo-1,4-beta-glucanase precursor (Cel1) mRNA, complete cds.
| Other genome matches | None |
Literature annotations [3]
Literature annotations [3]
| [Associate publication] [Matching publications] |
Two divergent endo-beta-1,4-glucanase genes exhibit overlapping expression in ripening fruit and abscising flowers.
The Plant cell (1994)
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Two structurally divergent endo-beta-1,4-glucanase (EGase) cDNAs were cloned from tomato. Although both cDNAs (Cel1 and Cel2) encode potentially glycosylated, basic proteins of 51 to 53 kD and possess multiple amino acid domains conserved in both plant and microbial EGases, Cel1 and Cel2 exhibit only 50% amino acid identity at the overall sequence level. Amino acid sequence comparisons to other plant EGases indicate that tomato Cel1 is most similar to bean abscission zone EGase (68%), whereas Cel2 exhibits greatest sequence identity to avocado fruit EGase (57%). Sequence comparisons suggest the presence of at least two structurally divergent EGase families in plants. Unlike ripening avocado fruit and bean abscission zones in which a single EGase mRNA predominates, EGase expression in tomato reflects the overlapping accumulation of both Cel1 and Cel2 transcripts in ripening fruit and in plant organs undergoing cell separation. Cel1 mRNA contributes significantly to total EGase mRNA accumulation within plant organs undergoing cell separation (abscission zones and mature anthers), whereas Cel2 mRNA is most abundant in ripening fruit. The overlapping expression of divergent EGase genes within a single species may suggest that multiple activities are required for the cooperative disassembly of cell wall components during fruit ripening, floral abscission, and anther dehiscence.
Lashbrook, CC. Gonzalez, Bosch. Bennett, AB.
The Plant cell.
1994.
6(10).
1485-93.
Characterization of tomato endo-beta-1,4-glucanase Cel1 protein in fruit during ripening and after fungal infection.
Planta (2004)
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The tomato (Lycopersicon esculentum Mill.) endo-beta-1,4-glucanase (EGase) Cel1 protein was characterized in fruit using specific antibodies. Two polypeptides ranging between 51 and 52 kDa were detected in the pericarp, and polypeptides ranging between 49 and 51 kDa were detected in locules. The polypeptides recognized by Cel1 antiserum in fruit are within the size range predicted for Cel1 protein and could be derived from heterogeneous glycosylation. Cel1 protein accumulation was examined throughout fruit ripening. Cel1 protein appears in the pericarp at the stage in which many ripening-related changes start, and remains present throughout fruit ripening. In locules, Cel1 protein is already present at the onset of fruit ripening and remains constant during fruit ripening. This pattern of expression supports a possible role for this EGase in the softening of pericarp tissue and in the liquefaction of locules that takes place during ripening. The accumulation of Cel1 protein was also analyzed after fungal infection. Cel1 protein and mRNA levels are down-regulated in pericarp after Botrytis cinerea infection but are not affected in locular tissue. The same behavior was observed when fruits were infected with Penicillium expansum, another fungal pathogen. Cel1 protein and mRNA levels do not respond to wounding. These results support the idea that the tomato Cel1 EGase responds to pathogen infection and supports a relationship between EGases, plant defense responses and fruit ripening.
Real, Maria. Company, Patricia. García-Agustín, Pilar. Bennett, Alan. González-Bosch, Carmen.
Planta.
2004.
220(1).
80-6.
Absence of the endo-beta-1,4-glucanases Cel1 and Cel2 reduces susceptibility to Botrytis cinerea in tomato.
The Plant journal : for cell and molecular biology (2008)
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Cel1 and Cel2 are members of the tomato (Solanum lycopersicum Mill) endo-beta-1,4-glucanase (EGase) family that may play a role in fruit ripening and organ abscission. This work demonstrates that Cel1 protein is present in other vegetative tissues and accumulates during leaf development. We recently reported the downregulation of both the Cel1 mRNA and protein upon fungal infection, suggesting the involvement of EGases in plant-pathogen interactions. This hypothesis was confirmed by assessing the resistance to Botrytis cinerea infection of transgenic plants expressing both genes in an antisense orientation (Anti-Cel1, Anti-Cel2 and Anti-Cel1-Cel2). The Anti-Cel1-Cel2 plants showed enhanced resistance to this fungal necrotroph. Microscopical analysis of infected leaves revealed that tomato plants accumulated pathogen-inducible callose within the expanding lesion. Anti-Cel1-Cel2 plants presented a faster and enhanced callose accumulation against B. cinerea than wild-type plants. The inhibitor 2-deoxy-d-glucose, a callose synthesis inhibitor, showed a direct relationship between faster callose accumulation and enhanced resistance to B. cinerea. EGase activity appears to negatively modulate callose deposition. The absence of both EGase genes was associated with changes in the expression of the pathogen-related genes PR1 and LoxD. Interestingly, Anti-Cel1-Cel2 plants were more susceptible to Pseudomonas syringae, displaying severe disease symptoms and enhanced bacterial growth relative to wild-type plants. Analysis of the involvement of Cel1 and Cel2 in the susceptibility to B. cinerea in fruits was done with the ripening-impaired mutants Never ripe (Nr) and Ripening inhibitor (rin). The data reported in this work support the idea that enzymes involved in cell wall metabolism play a role in susceptibility to pathogens.
Flors, V. Leyva, Mde L. Vicedo, B. Finiti, I. Real, MD. García-Agustín, P. Bennett, AB. González-Bosch, C.
The Plant journal : for cell and molecular biology.
2008.
52(6).
1027-40.
Ontology annotations (4)
Ontology annotations (4)
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