EST details — SGN-C10855

Search information 
Request: 10855Match: SGN-C10855
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C10855Clone name: cLEC-6-H18
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172724 is on microarray TOM1: SGN-S1-1-7.1.20.6
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172724 [TUS-14-E10] Trace: SGN-T195372 EST: SGN-E394046 Direction: 3' Facility: INRA
Clone: SGN-C172724 [TUS-14-E10] Trace: SGN-T195372 EST: SGN-E399539 Direction: 3' Facility: INRA
Clone: SGN-C172724 [TUS-14-E10] Trace: SGN-T195664 EST: SGN-E394338 Direction: 5' Facility: INRA
Clone: SGN-C172724 [TUS-14-E10] Trace: SGN-T199452 EST: SGN-E398126 Direction: 3' Facility: INRA
Clone: SGN-C172724 [TUS-14-E10] Trace: SGN-T200209 EST: SGN-E399042 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E202559Length: 528 bp (806 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202559 [] (trimmed) ATCGTCAATAGTGTAAAATGATTTCTCAATAATGGAGAAATTGTTGAAACTGCGAGTTTTGCTTCTCCTTCTTCTTCTTCTTCAACAACAACAAG
AAGCTAATTCGTATTCTACTGTTGAGTATCTTCCCGGTTGGCAGGGCCGCCTCCCGTTTCCTCTAGAGACCGGGTATGTTGGAGTCGGTAAAGAT
GAGGCGGTGCAACTTTTCTACTATTTTTTGGAGTCAGAATCAGAGCCTACTACTGATCCTCTTTTGGTTTGGCTATCTGGTGGACCAGGTTGCTC
TTCTGTCATTGCCATTGTTGATGAGATAGGACCAATCCGTTTTGTGGAACAAGTCTACAATGGGAGTATGCCATCGTTTGAACTAAATCCACATG
CATGGACAAAAATAGCAAATGTAATATTTTTGGATCAACCAGTAAACACTGGATTCTCATATGCAACAAATTCAGCTGCATATAAGTATACTGAT
GTGCAAGCATGTGAATATGTCTATGAATTCTTAAGAAAGTGGCTCAATGATCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202559] SGN-U583065 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T24220 [Download][View] Facility Assigned ID: TCAAX45TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0084 Quality Trim Threshold: 14.5