EST details — SGN-C10924

Search information 
Request: 10924Match: SGN-C10924
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C10924Clone name: cLEC-6-K20
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172770 is on microarray TOM1: SGN-S1-1-1.3.20.2
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172770 [TUS-14-G8] Trace: SGN-T195231 EST: SGN-E393905 Direction: 3' Facility: INRA
Clone: SGN-C172770 [TUS-14-G8] Trace: SGN-T195232 EST: SGN-E393906 Direction: 5' Facility: INRA
Clone: SGN-C172770 [TUS-14-G8] Trace: SGN-T195232 EST: SGN-E399055 Direction: 5' Facility: INRA
Clone: SGN-C172770 [TUS-14-G8] Trace: SGN-T195673 EST: SGN-E394347 Direction: 3' Facility: INRA
Clone: SGN-C172770 [TUS-14-G8] Trace: SGN-T195673 EST: SGN-E399054 Direction: 3' Facility: INRA
Clone: SGN-C172770 [TUS-14-G8] Trace: SGN-T199552 EST: SGN-E398226 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E202478Length: 623 bp (860 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202478 [] (trimmed) CTCGTGCCGTTTTGATTCTTCACTACTTGTAGTACTAATCCTTTCTATTTTTGTTTCAATCCATTTTCAAGTAACACAAGCTCAAGGTACTCAAC
CAATTGTGAAAGGTCTTTCATGGACTTTTTATGACTCCATTTGTCCCAATGCTGAGTCCATCATCAGGAGGAGACTCCAGAATGTTTTCCGGCAG
GATATCGGTCAGGCCGCCGGCCTTCTTCGTCTTCACTTCCATGATTGCTTTGTTCAGGGTTGTGATGGATCAGTACTGTTAGATGGTTCAGCCAG
TGGACCAAGCGAGAAAGATGCACCCCCAAACTTGACTTTAAGACAACAGGCTTTTCGGATCATCGAAGACCTTCGCCGTCGTGTGCATCGTGATT
GCGGTAGAGTCGTTTCTTGTGCTGATATTACGGCTATTGCTGCTCGTGACTCCGTTTTCTTCTCGGGTGGCCCGGACTATGATCTACCACTAGGA
AGAAGGGATGGACTCACTTTTGCAACAACAAATGAAACCCTAGCCAATCTCCCACCACCTTCATTCAACACAAGTTTAATTCTAGCTTCACTTGC
TACCAAAAACTTCACTCCCACAGATGTTGTTGCACTATCTGGTGGTCACACTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202478] SGN-U583086 Tomato 200607 Build 2 37 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T24139 [Download][View] Facility Assigned ID: TCAAV70TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0061 Quality Trim Threshold: 14.5